Nuclear lncRNAs as epigenetic regulators-beyond skepticism (Q26823935)

Yuji Kageyama

series ordinal

2

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language of work or name

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March 2014

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Biochimica et Biophysica Acta

published in

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volume

1839

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issue

3

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page(s)

215-22

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Completion of mouse embryogenesis requires both the maternal and paternal genomes

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Antisense transcription controls cell fate in Saccharomyces cerevisiae

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Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

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Long noncoding RNAs with enhancer-like function in human cells

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A long ncRNA links copy number variation to a polycomb/trithorax epigenetic switch in FSHD muscular dystrophy

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Braveheart, a long noncoding RNA required for cardiovascular lineage commitment

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The NeST long ncRNA controls microbial susceptibility and epigenetic activation of the interferon-γ locus

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The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult

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Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos

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The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

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A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization

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7 January 2021

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

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Altered nuclear retention of mRNAs containing inverted repeats in human embryonic stem cells: functional role of a nuclear noncoding RNA

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Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a

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Genome-wide identification of polycomb-associated RNAs by RIP-seq

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7 January 2021

The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin

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7 January 2021

Kcnq1ot1: a chromatin regulatory RNA.

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Characterization of the yeast transcriptome

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roX1 RNA paints the X chromosome of male Drosophila and is regulated by the dosage compensation system

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Genes expressed in neurons of adult male Drosophila

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7 January 2021

Methylation of histone H3 at Lys-9 is an early mark on the X chromosome during X inactivation

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7 January 2021

Mitotically stable association of polycomb group proteins eed and enx1 with the inactive x chromosome in trophoblast stem cells

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Establishment of histone h3 methylation on the inactive X chromosome requires transient recruitment of Eed-Enx1 polycomb group complexes

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Gene action in the X-chromosome of the mouse (Mus musculus L.)

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Development of reconstituted mouse eggs suggests imprinting of the genome during gametogenesis

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Role of paternal and maternal genomes in mouse development

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Chromodomains are protein-RNA interaction modules

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Genomic imprinting: parental influence on the genome

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Functional annotation of a full-length mouse cDNA collection

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Experimental annotation of the human genome using microarray technology

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Conservation of position and exclusive expression of mouse Xist from the inactive X chromosome.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Requirement for Xist in X chromosome inactivation

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The non-coding Air RNA is required for silencing autosomal imprinted genes

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The imprinted antisense RNA at the Igf2r locus overlaps but does not imprint Mas1

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Tsix, a gene antisense to Xist at the X-inactivation centre

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

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7 January 2021

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

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7 January 2021

lincRNAs act in the circuitry controlling pluripotency and differentiation

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7 January 2021

Landscape of transcription in human cells

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7 January 2021

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription

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7 January 2021

Activating gene expression in mammalian cells with promoter-targeted duplex RNAs

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7 January 2021

Tiny RNAs associated with transcription start sites in animals.

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7 January 2021

Imprinted X inactivation maintained by a mouse Polycomb group gene

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7 January 2021

Mapping and quantifying mammalian transcriptomes by RNA-Seq

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7 January 2021

RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Involvement of AGO1 and AGO2 in mammalian transcriptional silencing

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Structure and function of long noncoding RNAs in epigenetic regulation

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Large-scale analysis of the human and mouse transcriptomes

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

A maternally methylated CpG island in KvLQT1 is associated with an antisense paternal transcript and loss of imprinting in Beckwith-Wiedemann syndrome

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Loss of imprinting of a paternally expressed transcript, with antisense orientation to KVLQT1, occurs frequently in Beckwith-Wiedemann syndrome and is independent of insulin-like growth factor II imprinting

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

lncRNAdb: a reference database for long noncoding RNAs

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Involvement of argonaute proteins in gene silencing and activation by RNAs complementary to a non-coding transcript at the progesterone receptor promoter

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7 January 2021

NONCODE v3.0: integrative annotation of long noncoding RNAs

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7 January 2021

ncFANs: a web server for functional annotation of long non-coding RNAs

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

LncRNADisease: a database for long-non-coding RNA-associated diseases.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The transcriptional activity of human Chromosome 22

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Novel transcripts from the Ultrabithorax domain of the bithorax complex.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Suppression of progenitor differentiation requires the long noncoding RNA ANCR.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Noncoding RNA gene silencing through genomic integration of RNA destabilizing elements using zinc finger nucleases

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Long non-coding RNAs in nuclear bodies

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Large-scale transcriptional activity in chromosomes 21 and 22

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Role of histone H3 lysine 27 methylation in X inactivation

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Global identification of human transcribed sequences with genome tiling arrays

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The transcriptional landscape of the mammalian genome

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Divergent transcription from active promoters

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Long noncoding RNA as modular scaffold of histone modification complexes

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Epigenetic regulation by long noncoding RNAs

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Equality for X chromosomes

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Genome regulation by long noncoding RNAs.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Depletion of Kcnq1ot1 non-coding RNA does not affect imprinting maintenance in stem cells

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Chromosome silencing mechanisms in X-chromosome inactivation: unknown unknowns.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Imprinted Igf2r silencing depends on continuous Airn lncRNA expression and is not restricted to a developmental window.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The mRNA-like noncoding RNA Gomafu constitutes a novel nuclear domain in a subset of neurons.

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Malat1 is not an essential component of nuclear speckles in mice

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Most "dark matter" transcripts are associated with known genes

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

The reality of pervasive transcription

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development

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https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021

roX RNAs: non-coding regulators of the male X chromosome in flies.

1 reference

https://api.crossref.org/works/10.1016%2FJ.BBAGRM.2013.10.009

7 January 2021