Structure of transfer RNAs: similarity and variability (Q26824405)

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Peter F. Stadler

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object named as

Peter Stadler

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Frank Jühling

2

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Joern Pütz

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Catherine Florentz

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language of work or name

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2012

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Wiley interdisciplinary reviews. RNA

published in

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volume

3

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issue

1

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page(s)

37-61

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tRNAdb 2009: compilation of tRNA sequences and tRNA genes

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Transfer RNA: Molecular Structure, Sequence, and Properties

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1964: The first model for the shape of a transfer RNA molecule. An account of an unpublished small-angle X-ray scattering study

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STRUCTURE OF A RIBONUCLEIC ACID

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Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

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Structure of yeast phenylalanine tRNA at 3 Å resolution

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Shape-selective RNA recognition by cysteinyl-tRNA synthetase

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What recent ribosome structures have revealed about the mechanism of translation

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Native-like RNA tertiary structures using a sequence-encoded cleavage agent and refinement by discrete molecular dynamics

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The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

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The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

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Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu

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X-ray diffraction analysis of a human tRNA(Gly) acceptor-stem microhelix isoacceptor at 1.18 A resolution

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Design, biological activity and NMR-solution structure of a DNA analogue of yeast tRNA(Phe) anticodon domain

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A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain

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Deciphering synonymous codons in the three domains of life: co-evolution with specific tRNA modification enzymes

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tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

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GtRNAdb: a database of transfer RNA genes detected in genomic sequence

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A manually curated database of tetrapod mitochondrially encoded tRNA sequences and secondary structures

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Tri-split tRNA is a transfer RNA made from 3 transcripts that provides insight into the evolution of fragmented tRNAs in archaea

21 January 2018

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Magnesium-dependent alternative foldings of active and inactive Escherichia coli tRNA(Glu) revealed by chemical probing

21 January 2018

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Discovery of permuted and recently split transfer RNAs in Archaea

21 January 2018

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Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.

21 January 2018

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Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs

21 January 2018

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RNA editing of tRNA(Phe) and tRNA(Cys) in mitochondria of Oenothera berteriana is initiated in precursor molecules

21 January 2018

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Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

21 January 2018

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Two forms of RNA editing are required for tRNA maturation in Physarum mitochondria

21 January 2018

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A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

21 January 2018

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Inosine cyanoethylation identifies A-to-I RNA editing sites in the human transcriptome

21 January 2018

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tRNA's wobble decoding of the genome: 40 years of modification

21 January 2018

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A minimalist glutamyl-tRNA synthetase dedicated to aminoacylation of the tRNAAsp QUC anticodon.

21 January 2018

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A Watson-Crick base-pair-disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys.

21 January 2018

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Post-transcriptional nucleotide modification and alternative folding of RNA

21 January 2018

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tRNA stabilization by modified nucleotides

21 January 2018

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Impact of disease-related mitochondrial mutations on tRNA structure and function

21 January 2018

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RNA folding at elementary step resolution

21 January 2018

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Do all modifications benefit all tRNAs?

21 January 2018

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Hidden layers of human small RNAs

21 January 2018

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A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

21 January 2018

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Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts

21 January 2018

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A miRNA-tRNA mix-up: tRNA origin of proposed miRNA

21 January 2018

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Regulatory RNAs derived from transfer RNA?

21 January 2018

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Human tRNA-derived small RNAs in the global regulation of RNA silencing

21 January 2018

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Traces of post-transcriptional RNA modifications in deep sequencing data

21 January 2018

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The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop

21 January 2018

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Structure of E. coli glutaminyl-tRNA synthetase complexed with tRNA(Gln) and ATP at 2.8 A resolution

21 January 2018

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Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)

21 January 2018

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Universal rules and idiosyncratic features in tRNA identity

21 January 2018

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The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)

21 January 2018

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Crystal structure of human selenocysteine tRNA

21 January 2018

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Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality

21 January 2018

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Alternative Tertiary Structure of tRNA for Recognition by a Posttranscriptional Modification Enzyme

21 January 2018

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An unusual RNA tertiary interaction has a role for the specific aminoacylation of a transfer RNA.

21 January 2018

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Indirect readout of tRNA for aminoacylation.

21 January 2018

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21 January 2018

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Crystal structure of Thermotoga maritima ribosome recycling factor: a tRNA mimic

21 January 2018

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Structural aspects of messenger RNA reading frame maintenance by the ribosome

21 January 2018

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Crystal structure of a 70S ribosome-tRNA complex reveals functional interactions and rearrangements

21 January 2018

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A structural understanding of the dynamic ribosome machine

21 January 2018

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Biological implications of the ribosome's stunning stereochemistry

21 January 2018

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Structural insights into cognate versus near-cognate discrimination during decoding

21 January 2018

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Structure of the 70S ribosome complexed with mRNA and tRNA

21 January 2018

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The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA

21 January 2018

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Naturally-occurring modification restricts the anticodon domain conformational space of tRNA(Phe)

21 January 2018

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The role of modifications in codon discrimination by tRNA(Lys)UUU.

21 January 2018

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Mitochondrial tRNA import and its consequences for mitochondrial translation

21 January 2018

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The nucleotide sequence of a small (3S) seryl-tRNA (anticodon GCU) from beef heart mitochondria.

21 January 2018

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Search for characteristic structural features of mammalian mitochondrial tRNAs.

21 January 2018

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T-armless tRNAs and elongated elongation factor Tu.

21 January 2018

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Improved tRNA prediction in the American house dust mite reveals widespread occurrence of extremely short minimal tRNAs in acariform mites

21 January 2018

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The complete mitochondrial genome of the citrus red mite Panonychus citri (Acari: Tetranychidae): high genome rearrangement and extremely truncated tRNAs

21 January 2018

1 reference

Diversity and similarity in the tRNA world: overall view and case study on malaria-related tRNAs

21 January 2018

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A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods

21 January 2018

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Higher-order structure of bovine mitochondrial tRNA(SerUGA): chemical modification and computer modeling.

21 January 2018

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Determination of the angle between the acceptor and anticodon stems of a truncated mitochondrial tRNA.

21 January 2018

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Nucleotide correlations that suggest tertiary interactions in the TV-replacement loop-containing mitochondrial tRNAs of the nematodes, Caenorhabditis elegans and Ascaris suum

21 January 2018

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Fitting the structurally diverse animal mitochondrial tRNAs(Ser) to common three-dimensional constraints.

21 January 2018

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Higher-order structure of bovine mitochondrial tRNA(Phe) lacking the 'conserved' GG and T psi CG sequences as inferred by enzymatic and chemical probing.

21 January 2018

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Tertiary network in mammalian mitochondrial tRNAAsp revealed by solution probing and phylogeny

21 January 2018

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Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA.

21 January 2018

1 reference

The human mitochondrial tRNAMet: structure/function relationship of a unique modification in the decoding of unconventional codons.

21 January 2018

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Unique features of animal mitochondrial translation systems. The non-universal genetic code, unusual features of the translational apparatus and their relevance to human mitochondrial diseases

21 January 2018

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21 January 2018

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The structure of an AspRS-tRNA(Asp) complex reveals a tRNA-dependent control mechanism

21 January 2018

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The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA

21 January 2018

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The crystal structure of unmodified tRNAPhe from Escherichia coli

21 January 2018

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Snapshots of Dynamics in Synthesizing N 6 -Isopentenyladenosine at the tRNA Anticodon

21 January 2018

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RNA-Protein Mutually Induced Fit: STRUCTURE OF ESCHERICHIA COLI ISOPENTENYL-tRNA TRANSFERASE IN COMPLEX WITH tRNA(Phe)

21 January 2018

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Aminoglycoside binding displaces a divalent metal ion in a tRNA-neomycin B complex

21 January 2018

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Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog

21 January 2018

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Complete crystallographic analysis of the dynamics of CCA sequence addition.

21 January 2018

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Crystallographic snapshots of eukaryotic dimethylallyltransferase acting on tRNA: Insight into tRNA recognition and reaction mechanism

21 January 2018

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The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer

21 January 2018

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Structural dynamics of the ribosome

21 January 2018

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Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

21 January 2018

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How mutations in tRNA distant from the anticodon affect the fidelity of decoding

21 January 2018

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Experimental and computational determination of tRNA dynamics

21 January 2018

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Dynamical networks in tRNA:protein complexes

21 January 2018

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The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain

21 January 2018

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Stable tRNA-based phylogenies using only 76 nucleotides

21 January 2018

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An operational RNA code for amino acids and possible relationship to genetic code

21 January 2018

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A truncated aminoacyl-tRNA synthetase modifies RNA.

21 January 2018

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Structure of a mitochondrial ribosome with minimal RNA

21 January 2018

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RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme

21 January 2018

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Human mitochondrial tRNAs in health and disease.

21 January 2018

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tRNA binds to cytochrome c and inhibits caspase activation

21 January 2018

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Interactions between avian myeloblastosis reverse transcriptase and tRNATrp. Mapping of complexed tRNA with chemicals and nucleases

21 January 2018

1 reference

A Methyl Group Controls Conformational Equilibrium in Human Mitochondrial tRNALys

21 January 2018

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Structural rearrangements of the ribosome at the tRNA proofreading step

21 January 2018

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Large-amplitude bending motions in phenylalanine transfer RNA

21 January 2018

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7 January 2021

Structural rules and conformational compensations in the tRNA L-form

1 reference

7 January 2021

RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin

1 reference

7 January 2021

Higher-order structure and thermal instability of bovine mitochondrial tRNASerUGA investigated by proton NMR spectroscopy

1 reference

7 January 2021

Mitochondrial genome sequence of Unionicola foili (Acari: Unionicolidae): a unique gene order with implications for phylogenetic inference

1 reference

7 January 2021

Tryptophan transfer RNA as the UGA suppressor

1 reference

7 January 2021

Yeast tRNAAsp tertiary structure in solution and areas of interaction of the tRNA with aspartyl-tRNA synthetase. A comparative study of the yeast phenylalanine system by phosphate alkylation experiments with ethylnitrosourea

1 reference

7 January 2021

Transfer RNA gene recruitment in mitochondrial DNA

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7 January 2021

The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function.

1 reference

7 January 2021

Crystal structure of unmodified tRNA(Gln) complexed with glutaminyl-tRNA synthetase and ATP suggests a possible role for pseudo-uridines in stabilization of RNA structure

1 reference

7 January 2021

Structure of an unmodified tRNA molecule

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7 January 2021

Mimics of yeast tRNAAsp and their recognition by aspartyl-tRNA synthetase

1 reference

7 January 2021

Crystal structure of yeast tRNAAsp

1 reference

7 January 2021

Yeast tRNAAsp recognition by its cognate class II aminoacyl-tRNA synthetase

1 reference

7 January 2021

Frameshift Suppression: a Nucleotide Addition in the Anticodon of a Glycine Transfer RNA

1 reference

7 January 2021

Structural compensation in atypical mitochondrial tRNAs

1 reference

7 January 2021

Effect of modified nucleotides on Escherichia coli tRNAGlu structure and on its aminoacylation by glutamyl-tRNA synthetase. Predominant and distinct roles of the mnm5 and s2 modifications of U34

1 reference

7 January 2021

Assignment of imino proton signals of G-C base pairs and magnesium ion binding: an NMR study of bovine mitochondrial tRNA(SerGCU) lacking the entire D arm

1 reference

7 January 2021

Identifiers

DOI

10.1002/WRNA.103

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Consolidated OpenCitations Corpus – April 2017

release_o5pbbqjlmnfwxppvw36j3afcia

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/o5pbbqjlmnfwxppvw36j3afcia

24 November 2022

mapped directly with Wikidata item

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Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

21957054

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Consolidated OpenCitations Corpus – April 2017