The application of ecological theory toward an understanding of the human microbiome (Q26825590)

3

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Brendan Bohannan

4

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David Relman

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author name string

E. K. Costello

1

1 reference

D. A. Relman

5

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language of work or name

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8 June 2012

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full work available at URL

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4208626

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21 March 2022

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336

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issue

6086

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page(s)

1255-62

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on focus list of Wikimedia project

ScienceSource

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maintained by WikiProject

WikiProject Invasion Biology

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1 reference

Microbial exposure during early life has persistent effects on natural killer T cell function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Linking long-term dietary patterns with gut microbial enterotypes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Moving pictures of the human microbiome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Enterotypes of the human gut microbiome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Bacterial charity work leads to population-wide resistance

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

A core gut microbiome in obese and lean twins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Development of the human infant intestinal microbiota

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Molecular monitoring of succession of bacterial communities in human neonates

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Microbial ecology of the gastrointestinal tract

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

An obesity-associated gut microbiome with increased capacity for energy harvest

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Vaginal microbiome of reproductive-age women

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Human intestinal bacteria as reservoirs for antibiotic resistance genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The inner of the two Muc2 mucin-dependent mucus layers in colon is devoid of bacteria

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Bifidobacteria can protect from enteropathogenic infection through production of acetate

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Succession of microbial consortia in the developing infant gut microbiome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

An ecological and evolutionary perspective on human-microbe mutualism and disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Factors influencing the composition of the intestinal microbiota in early infancy

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Interactions between commensal intestinal bacteria and the immune system

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis

7 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Temporal dynamics of the human vaginal microbiota

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Linking metacommunity theory and symbiont evolutionary ecology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The habitat, double life, citizenship, and forgetfulness of IgA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Community assembly: alternative stable states or alternative transient states?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Empirical approaches to metacommunities: a review and comparison with theory

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The developing intestinal microbiome and its relationship to health and disease in the neonate

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Oral biofilms: a reservoir of transferable, bacterial, antimicrobial resistance.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Combined niche and neutral effects in a microbial wastewater treatment community.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Rapid fluctuation of the vaginal microbiota measured by Gram stain analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Conceptual synthesis in community ecology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Consumption of human milk oligosaccharides by gut-related microbes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Host-microbe interactions in the developing zebrafish

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Immune responses to the microbiota at the intestinal mucosal surface

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The role of the intestinal microbiota in enteric infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Clostridium difficile--more difficult than ever

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The evolutionary ecology of metacommunities

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Antimicrobial-associated risk factors for Clostridium difficile infection

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The role of ecological theory in microbial ecology.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Immigration history controls diversification in experimental adaptive radiation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Evaluating the long-term metacommunity dynamics of tree hole mosquitoes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Outpatient antibiotic use in Europe and association with resistance: a cross-national database study

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Getting a grip on things: how do communities of bacterial symbionts become established in our intestine?

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Modeling infection transmission

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Developmental microbial ecology of the neonatal gastrointestinal tract

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Transmission of mother's microflora to the newborn at birth

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Antagonism exerted by an association of a Bacteroides thetaiotaomicron strain and a Fusobacterium necrogenes strain against Clostridium perfringens in gnotobiotic mice and in fecal suspensions incubated in vitro

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Signaling-mediated bacterial persister formation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The nineteenth century roots of 'everything is everywhere'.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Development of the faecal anaerobic microflora after caesarean section and treatment with antibiotics in newborn infants

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

The intestinal bacteria of the neonate and breast-fed infant. 1884.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4208626

Ecology drives a global network of gene exchange connecting the human microbiome.

31 May 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

The metacommunity concept: a framework for multi-scale community ecology

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Metacommunity organization of soil microorganisms depends on habitat defined by presence of Lobelia siphilitica plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Quantifying the roles of immigration and chance in shaping prokaryote community structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Correlation among the indices of high-resolution computed tomography, pulmonary function tests, pulmonary perfusion scans and exercise tolerance in cases of chronic pulmonary emphysema.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Convergent temporal dynamics of the human infant gut microbiota.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Long-term ecological impacts of antibiotic administration on the human intestinal microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Microbiota-targeted therapies: an ecological perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Community ecology theory as a framework for biological invasions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Enhanced susceptibility to Salmonella infection in streptomycin-treated mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Faecal microbiota in breast-fed infants after antibiotic therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

Probiotics prevent IgE-associated allergy until age 5 years in cesarean-delivered children but not in the total cohort

21 January 2018

1 reference

12 December 2020

Mode and place of delivery, gastrointestinal microbiota, and their influence on asthma and atopy

1 reference

12 December 2020

1 reference

12 December 2020

Community assembly: when should history matter?

1 reference

12 December 2020

Interactions between the microbiota and the immune system

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1224203

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1126/SCIENCE.1224203

1 reference

release_ztp736eqbjf5jlpx223jzoyu4y

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606070

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1 reference

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