Advances in BAC-based physical mapping and map integration strategies in plants (Q26825602)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

review article

0 references

title

Advances in BAC-based physical mapping and map integration strategies in plants (English)

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

biomedical investigative technique

28 January 2020

main subject

1 reference

19 September 2019

1 reference

22 October 2019

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

Ruvini Ariyadasa

series ordinal

1

0 references

language of work or name

1 reference

27 February 2012

3 references

19 September 2019

22 October 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biomedicine and Biotechnology

28 January 2020

published in

4 references

19 September 2019

22 October 2019

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

volume

2012

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

page(s)

184854

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 3.0 Unported

28 January 2020

copyright license

start time

1 January 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

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BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.).

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Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

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28 September 2017

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The first insight into the Taxus genome via fosmid library construction and end sequencing

28 September 2017

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Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources

28 September 2017

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28 September 2017

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Limitations of next-generation genome sequence assembly

28 September 2017

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Crop genome sequencing: lessons and rationales

28 September 2017

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Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

28 September 2017

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An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research.

28 September 2017

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28 September 2017

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A simple, high throughput method to locate single copy sequences from Bacterial Artificial Chromosome (BAC) libraries using High Resolution Melt analysis

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

The physical and genetic framework of the maize B73 genome

28 September 2017

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A BAC-based physical map of Brachypodium distachyon and its comparative analysis with rice and wheat

28 September 2017

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28 September 2017

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28 September 2017

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A high-throughput strategy for screening of bacterial artificial chromosome libraries and anchoring of clones on a genetic map constructed with single nucleotide polymorphisms

28 September 2017

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28 September 2017

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28 September 2017

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28 September 2017

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Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction of a fosmid library of cucumber (Cucumis sativus) and comparative analyses of the eIF4E and eIF(iso)4E regions from cucumber and melon (Cucumis melo).

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Genetic marker anchoring by six-dimensional pools for development of a soybean physical map

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Physical mapping in large genomes: accelerating anchoring of BAC contigs to genetic maps through in silico analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and screening of BAC libraries made from Brachypodium genomic DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A BAC end view of the Musa acuminata genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A BAC pooling strategy combined with PCR-based screenings in a large, highly repetitive genome enables integration of the maize genetic and physical maps

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

An improved method to identify BAC clones using pooled overgos

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Eukaryotic genome size databases

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A sunflower BAC library suitable for PCR screening and physical mapping of targeted genomic regions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Toward a physical map of the genome of the nematode Caenorhabditis elegans

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A genome-wide survey of structural variation between human and chimpanzee

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Whole-genome validation of high-information-content fingerprinting

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Comparative physical mapping links conservation of microsynteny to chromosome structure and recombination in grasses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and characterization of a peanut HindIII BAC library

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and characterization of BAC libraries from major grapevine cultivars

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Mapping and sequencing complex genomes: let's get physical!

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and characterization of a soybean bacterial artificial chromosome library and use of multiple complementary libraries for genome physical mapping

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A BAC- and BIBAC-based physical map of the soybean genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction of a gorilla fosmid library and its PCR screening system

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and utility of 10-kb libraries for efficient clone-gap closure for rice genome sequencing

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Approaches to library screening.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A physical map of the mouse genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

An integrated physical and genetic map of the rice genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

28 September 2017

Whole-genome disassembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

ComboScreen facilitates the multiplex hybridization-based screening of high-density clone arrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Anchoring of rice BAC clones to the rice genetic map in silico

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A high-throughput AFLP-based method for constructing integrated genetic and physical maps: progress toward a sorghum genome map.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Sequence-tagged connectors: a sequence approach to mapping and scanning the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Screening for overlapping bacterial artificial chromosome clones by PCR analysis with an arbitrary primer

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and characterization of human chromosome 2-specific cosmid, fosmid, and PAC clone libraries

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Efficient pooling designs for library screening.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Theoretical analysis of library screening using a N-dimensional pooling strategy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Sequence-tagged site (STS) content mapping of human chromosomes: theoretical considerations and early experiences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

The nuclear genome of Brachypodium distachyon: analysis of BAC end sequences

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Five-color-based high-information-content fingerprinting of bacterial artificial chromosome clones using type IIS restriction endonucleases

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Contig assembly of bacterial artificial chromosome clones through multiplexed fluorescence-labeled fingerprinting

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

FPC: a system for building contigs from restriction fingerprinted clones

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

A common language for physical mapping of the human genome

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Construction and characterization of large-insert genomic libraries (BAC and fosmid) from the Ascidian Botryllus schlosseri and initial physical mapping of a histocompatibility locus.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3303678

Computational comparison of two draft sequences of the human genome.

31 May 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F184854

Construction and utility of a human chromosome 22-specific Fosmid library

21 January 2018

2 references

https://api.crossref.org/works/10.1155%2F2012%2F184854

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/22500080

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Highly parallel gene-to-BAC addressing using microarrays

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F184854

Integration of animal linkage and BAC contig maps using overgo hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F184854

Highly parallel SNP genotyping

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F184854

Reconstructing tumor genome architectures

21 January 2018

1 reference

https://api.crossref.org/works/10.1155%2F2012%2F184854

An overview of the apple genome through BAC end sequence analysis

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22500080

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Access to the maize genome: an integrated physical and genetic map

1 reference

https://pubmed.ncbi.nlm.nih.gov/22500080

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

release_u4erh5ihqjfdjjw3kpyl4ghf4q

28 January 2020

Fatcat ID

0 references

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22500080%20AND%20SRC:MED&resulttype=core&format=json