Sizing up metatranscriptomics (Q26851923)

5

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Patricia L Yager

object named as

Patricia L Yager

12

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Mary Ann Moran

object named as

Mary Ann Moran

1

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author name string

Scott M Gifford

3

1 reference

Haiwei Luo

4

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Leong-Keat Chan

6

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Jun Meng

7

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Bryndan P Durham

8

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Chen Shen

9

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Vanessa A Varaljay

10

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Christa B Smith

11

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Brian M Hopkinson

13

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language of work or name

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February 2013

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1 reference

7

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issue

2

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page(s)

237-43

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Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Expression patterns reveal niche diversification in a marine microbial assemblage

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Deep subseafloor microbial cells on physiological standby.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Quantitative analysis of a deeply sequenced marine microbial metatranscriptome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Constitutive expression of the proteorhodopsin gene by a flavobacterium strain representative of the proteorhodopsin-producing microbial community in the North Sea.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Transporter genes expressed by coastal bacterioplankton in response to dissolved organic carbon

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Correlation of mRNA and protein in complex biological samples.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

The genomic basis of trophic strategy in marine bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Rapid chemotactic response enables marine bacteria to exploit ephemeral microscale nutrient patches

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine alpha-proteobacteria and Rhodobacter sphaeroides.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Microbial structuring of marine ecosystems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Stochastic gene expression: from single molecules to the proteome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

PROTEIN TURNOVER IN MICRO-ORGANISMS.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Real-time kinetics of gene activity in individual bacteria

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Isolation of Typical Marine Bacteria by Dilution Culture: Growth, Maintenance, and Characteristics of Isolates under Laboratory Conditions.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Relationships between Biovolume and Biomass of Naturally Derived Marine Bacterioplankton

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Sulfur and nitrogen limitation in Escherichia coli K-12: specific homeostatic responses

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Temperature dependence of metabolic rates for microbial growth, maintenance, and survival

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Global RNA half-life analysis in Escherichia coli reveals positional patterns of transcript degradation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Microbial behavior in a heterogeneous world

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Macromolecular Composition During Steady-State Growth of Escherichia coli B/r

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Variations in rRNA content of marine Vibrio spp. during starvation-survival and recovery

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Molecular eco-systems biology: towards an understanding of community function

31 May 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.94

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.94

Transport functions dominate the SAR11 metaproteome at low-nutrient extremes in the Sargasso Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2012.94

Turnover of protein in growing and non-growing populations of Escherichia coli

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3554401

Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms

28 November 2018

1 reference

12 December 2020

Identification of araC protein and two-dimensional gels, its in vivo instability and normal level

1 reference

12 December 2020

Changes of amino acid sequence in PEST-like area and QEEET motif affect degradation rate of D1 polypeptide in photosystem II

1 reference

12 December 2020

Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs

1 reference

12 December 2020

Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil

1 reference

12 December 2020

Protein turnover in growing cultures of Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1038/ISMEJ.2012.94

1 reference

Dimensions Publication ID

646311

1014703882

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646311

1 reference

1 reference

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