The research strategies for probing the function of long noncoding RNAs (Q26997073)

Zhen-Hua Wang

series ordinal

2

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Jin-Tao Guo

series ordinal

3

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language of work or name

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February 2012

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99

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PubMed

page(s)

76-80

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PubMed

issue

2

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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

PubMed

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7 January 2021

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Non-coding RNAs: hope or hype?

7 January 2021

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

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Identification and characterization of a novel gene Saf transcribed from the opposite strand of Fas.

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Dendritic BC1 RNA in translational control mechanisms

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A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

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An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region

7 January 2021

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RNA-mediated epigenetic programming of a genome-rearrangement pathway

7 January 2021

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

7 January 2021

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A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

7 January 2021

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The melanoma-upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion

7 January 2021

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A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

7 January 2021

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Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease

7 January 2021

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Characterization of a germ-line deletion, including the entire INK4/ARF locus, in a melanoma-neural system tumor family: identification of ANRIL, an antisense noncoding RNA whose expression coclusters with ARF.

7 January 2021

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A common allele on chromosome 9 associated with coronary heart disease

7 January 2021

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The impact of genomics on drug discovery

7 January 2021

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Role of gene expression microarray analysis in finding complex disease genes.

7 January 2021

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

7 January 2021

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NRED: a database of long noncoding RNA expression

7 January 2021

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Genome-Wide Identification of Long Noncoding RNAs in CD8+ T Cells

7 January 2021

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Specific expression of long noncoding RNAs in the mouse brain

7 January 2021

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

7 January 2021

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MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

7 January 2021

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Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome

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Long noncoding RNAs with enhancer-like function in human cells

7 January 2021

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Kcnq1ot1 noncoding RNA mediates transcriptional gene silencing by interacting with Dnmt1

7 January 2021

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A spatial dissection of the Arabidopsis floral transcriptome by MPSS.

7 January 2021

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RNA-Seq: a revolutionary tool for transcriptomics

7 January 2021

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

7 January 2021

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Exploring the gonad transcriptome of two extreme male pigs with RNA-seq

7 January 2021

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RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders

7 January 2021

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Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins

7 January 2021

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Analysis of transcriptome complexity through RNA sequencing in normal and failing murine hearts

7 January 2021

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RNA-Seq analyses generate comprehensive transcriptomic landscape and reveal complex transcript patterns in hepatocellular carcinoma

7 January 2021

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Design of studies using DNA microarrays

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Northern blot analysis for detection and quantification of RNA in pancreatic cancer cells and tissues

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Improved northern blot method for enhanced detection of small RNA.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Use of real-time quantitative PCR to validate the results of cDNA array and differential display PCR technologies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Clusters of internally primed transcripts reveal novel long noncoding RNAs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Long, abundantly expressed non-coding transcripts are altered in cancer

7 January 2021

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A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression

7 January 2021

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Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region

7 January 2021

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The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation

7 January 2021

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MENepsilon/beta noncoding RNAs are essential for structural integrity of nuclear paraspeckles

7 January 2021

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The long noncoding RNA Kcnq1ot1 organises a lineage-specific nuclear domain for epigenetic gene silencing

7 January 2021

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On the road to reading the RNA-interference code

7 January 2021

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Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

7 January 2021

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Long noncoding RNA as modular scaffold of histone modification complexes

7 January 2021

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A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster

7 January 2021

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LNA: a versatile tool for therapeutics and genomics

7 January 2021

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Locked nucleic acids (LNAs) reveal sequence requirements and kinetics of Xist RNA localization to the X chromosome

7 January 2021

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Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

RIP-Chip analysis: RNA-Binding Protein Immunoprecipitation-Microarray (Chip) Profiling.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Genome-wide identification of polycomb-associated RNAs by RIP-seq

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Mining Affymetrix microarray data for long non-coding RNAs: altered expression in the nucleus accumbens of heroin abusers

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Assessing the genomic evidence for conserved transcribed pseudogenes under selection

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Mining mammalian transcript data for functional long non-coding RNAs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

ncFANs: a web server for functional annotation of long non-coding RNAs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

Predicting protein associations with long noncoding RNAs.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

lncRNAdb: a reference database for long noncoding RNAs

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002

RNAdb 2.0--an expanded database of mammalian non-coding RNAs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YGENO.2011.12.002