Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs (Q27000736)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24149621%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Perspectives on the mechanism of transcriptional regulation by long non-coding RNAs (English)

1 reference

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28 February 2020

3

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28 February 2020

author name string

Thomas C Roberts

series ordinal

1

2 references

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28 February 2020

Kevin V Morris

series ordinal

2

2 references

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28 February 2020

language of work or name

1 reference

22 October 2013

1 reference

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28 February 2020

2 references

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28 February 2020

volume

9

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28 February 2020

page(s)

13-20

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28 February 2020

issue

1

2 references

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The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult

28 February 2020

cites work

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The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts

21 March 2017

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ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

21 March 2017

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YY1 tethers Xist RNA to the inactive X nucleation center

21 March 2017

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Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

21 March 2017

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Mediation of CTCF transcriptional insulation by DEAD-box RNA-binding protein p68 and steroid receptor RNA activator SRA

21 March 2017

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Long noncoding RNA as modular scaffold of histone modification complexes

21 March 2017

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Evidence for natural antisense transcript-mediated inhibition of microRNA function

21 March 2017

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

21 March 2017

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Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

21 March 2017

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Long non-coding RNAs in nervous system function and disease

21 March 2017

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Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation

21 March 2017

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Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities

21 March 2017

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 March 2017

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An operational definition of epigenetics

21 March 2017

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Transcriptional inhibiton of Hoxd4 expression by miRNA-10a in human breast cancer cells

21 March 2017

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RNA exosome depletion reveals transcription upstream of active human promoters

21 March 2017

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Differentiating protein-coding and noncoding RNA: challenges and ambiguities

21 March 2017

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Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

21 March 2017

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21 March 2017

The Vienna RNA websuite

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

21 March 2017

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MicroRNA-373 induces expression of genes with complementary promoter sequences

21 March 2017

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

21 March 2017

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Specific expression of long noncoding RNAs in the mouse brain

21 March 2017

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 March 2017

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Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs

21 March 2017

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Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

21 March 2017

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Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure

21 March 2017

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

21 March 2017

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 March 2017

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An antisense RNA regulates the bidirectional silencing property of the Kcnq1 imprinting control region

21 March 2017

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Translating the Histone Code

21 March 2017

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Structure and mechanism of a metal-sensing regulatory RNA

21 March 2017

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The language of covalent histone modifications

21 March 2017

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

7 April 2017

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The expanding RNA polymerase III transcriptome

21 March 2017

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Genome-wide identification of polycomb-associated RNAs by RIP-seq

21 March 2017

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The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

21 March 2017

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The non-coding Air RNA is required for silencing autosomal imprinted genes

21 March 2017

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A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

21 March 2017

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

21 March 2017

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Intergenic transcripts regulate the epigenetic state of rRNA genes

21 March 2017

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The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina

21 March 2017

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Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence

21 March 2017

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Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

21 March 2017

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A chromatin landmark and transcription initiation at most promoters in human cells

7 April 2017

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Epigenetics in human disease and prospects for epigenetic therapy

7 April 2017

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Modular regulatory principles of large non-coding RNAs

7 April 2017

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Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

7 April 2017

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Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

7 April 2017

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lincRNAs act in the circuitry controlling pluripotency and differentiation

7 April 2017

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

7 April 2017

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

7 April 2017

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Widespread transcription at neuronal activity-regulated enhancers

7 April 2017

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Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

7 April 2017

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RNA maps reveal new RNA classes and a possible function for pervasive transcription

7 April 2017

1 reference

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Therapeutic targeting of non-coding RNAs

7 April 2017

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R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.

28 September 2017

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Structure and function of long noncoding RNAs in epigenetic regulation

28 September 2017

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A pseudogene long-noncoding-RNA network regulates PTEN transcription and translation in human cells

28 September 2017

1 reference

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Long noncoding RNAs with snoRNA ends

28 September 2017

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Long noncoding RNAs are rarely translated in two human cell lines

28 September 2017

1 reference

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Combinatorial action of miRNAs regulates transcriptional and post-transcriptional gene silencing following in vivo PNS injury

28 September 2017

1 reference

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Inhibition of natural antisense transcripts in vivo results in gene-specific transcriptional upregulation.

28 September 2017

1 reference

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Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells

28 September 2017

1 reference

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Structural architecture of the human long non-coding RNA, steroid receptor RNA activator

28 September 2017

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The genomic binding sites of a noncoding RNA.

28 September 2017

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Targeted RNA sequencing reveals the deep complexity of the human transcriptome

28 September 2017

1 reference

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The reality of pervasive transcription

28 September 2017

1 reference

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Large-scale prediction of long non-coding RNA functions in a coding-non-coding gene co-expression network

28 September 2017

1 reference

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Transcriptional regulation of Oct4 by a long non-coding RNA antisense to Oct4-pseudogene 5

28 September 2017

1 reference

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Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells

28 September 2017

1 reference

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FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

28 September 2017

1 reference

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RNA folding in living cells

28 September 2017

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Molecular signals of epigenetic states

28 September 2017

1 reference

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Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

28 September 2017

1 reference

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Genome-wide measurement of RNA secondary structure in yeast

28 September 2017

1 reference

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MicroRNA-205-directed transcriptional activation of tumor suppressor genes in prostate cancer

28 September 2017

1 reference

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Advances in RNA structure analysis by chemical probing

28 September 2017

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Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome

28 September 2017

1 reference

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Riboswitch RNAs: using RNA to sense cellular metabolism

28 September 2017

1 reference

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Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

MicroRNA-directed transcriptional gene silencing in mammalian cells

28 September 2017

1 reference

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Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation

28 September 2017

1 reference

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Peptides encoded by short ORFs control development and define a new eukaryotic gene family

28 September 2017

1 reference

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Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Prediction of RNA secondary structure by free energy minimization

28 September 2017

1 reference

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A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Metabolic enzymes that bind RNA: yet another level of cellular regulatory network?

28 September 2017

1 reference

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Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function

28 September 2017

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28 September 2017

1 reference

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Role of a neuronal small non-messenger RNA: behavioural alterations in BC1 RNA-deleted mice.

28 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Antisense RNA in imprinting: spreading silence through Air.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Chromosomal silencing and localization are mediated by different domains of Xist RNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Propagating memory of transcriptional states

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Natural Antisense Makes Sense for Gene-specific Activation in Brain.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Glyceraldehyde-3-phosphate dehydrogenase selectively binds AU-rich RNA in the NAD(+)-binding region (Rossmann fold).

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Chromatin-associated RNA content of heterochromatin and euchromatin

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Probing RNA structure within living cells

31 May 2018

1 reference

Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component

21 January 2018

1 reference

Polycombs and microRNA-223 regulate human granulopoiesis by transcriptional control of target gene expression.

21 January 2018

1 reference

CTCF mediates interchromosomal colocalization between Igf2/H19 and Wsb1/Nf1.

21 January 2018

1 reference

Gene regulation: a reason for reading nonsense

21 January 2018

1 reference

Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus.

21 January 2018

1 reference

Comparative ncRNA gene and structure prediction using Foldalign and FoldalignM.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3928176

Allelic IGF2R repression does not correlate with expression of antisense RNA in human extraembryonic tissues

28 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/24149621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RNA and the epigenetic regulation of X chromosome inactivation

1 reference

https://pubmed.ncbi.nlm.nih.gov/24149621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/24149621

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.4161/EPI.26700

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24149621%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24149621%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24149621%20AND%20SRC:MED&resulttype=core&format=json