Metagenomics of the Svalbard reindeer rumen microbiome reveals abundance of polysaccharide utilization loci (Q27301412)

8

object named as

Vincent G H Eijsink

0 references

Alice Carolyn McHardy

6

object named as

Alice C McHardy

0 references

author name string

Alasdair K Mackenzie

2

0 references

Ivan Gregor

3

0 references

Wendy Smith

4

0 references

Monica A Sundset

5

0 references

Mark Morrison

Creative Commons Attribution 4.0 International

7

0 references

language of work or name

English

0 references

publication date

2012

0 references

published in

PLOS One

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volume

7

0 references

issue

6

0 references

page(s)

e38571

0 references

copyright license

start time

6 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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QIIME allows analysis of high-throughput community sequencing data

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Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

21 March 2017

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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

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Toward Automatic Reconstruction of a Highly Resolved Tree of Life

21 March 2017

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The integrated microbial genomes (IMG) system

21 March 2017

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21 March 2017

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Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens

21 March 2017

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The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist

21 March 2017

1 reference

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Unveiling an abundant core microbiota in the human adult colon by a phylogroup-independent searching approach

21 March 2017

1 reference

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FastTree 2--approximately maximum-likelihood trees for large alignments

21 March 2017

1 reference

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Search and clustering orders of magnitude faster than BLAST

21 March 2017

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Prodigal: prokaryotic gene recognition and translation initiation site identification

7 April 2017

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

7 April 2017

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Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

7 April 2017

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UniFrac: a new phylogenetic method for comparing microbial communities

7 April 2017

1 reference

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Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

7 April 2017

1 reference

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

7 April 2017

1 reference

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PyNAST: a flexible tool for aligning sequences to a template alignment

7 April 2017

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Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

7 April 2017

1 reference

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Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts

7 April 2017

1 reference

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High-yield and phylogenetically robust methods of DNA recovery for analysis of microbial biofilms adherent to plant biomass in the herbivore gut.

28 September 2017

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Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores

28 September 2017

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Mining metagenomes for novel cellulase genes

28 September 2017

1 reference

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Transcriptomic analyses of xylan degradation by Prevotella bryantii and insights into energy acquisition by xylanolytic bacteroidetes

28 September 2017

1 reference

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Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module

28 September 2017

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Complex glycan catabolism by the human gut microbiota: the Bacteroidetes Sus-like paradigm

28 September 2017

1 reference

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Isolation and partial characterization of novel genes encoding acidic cellulases from metagenomes of buffalo rumens

28 September 2017

1 reference

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From cellulosomes to cellulosomics

28 September 2017

1 reference

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Unique aspects of the grass cell wall

28 September 2017

1 reference

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IMG/M: a data management and analysis system for metagenomes

28 September 2017

1 reference

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Novel rumen bacterial diversity in two geographically separated sub-species of reindeer.

28 September 2017

1 reference

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MetaGene: prokaryotic gene finding from environmental genome shotgun sequences

28 September 2017

1 reference

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Characterization of four outer membrane proteins involved in binding starch to the cell surface of Bacteroides thetaiotaomicron

28 September 2017

1 reference

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Seasonal changes in the ruminal microflora of the high-arctic Svalbard reindeer (Rangifer tarandus platyrhynchus).

28 September 2017

1 reference

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Taxonomic metagenome sequence assignment with structured output models

28 September 2017

1 reference

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Prokaryotic gene prediction using GeneMark and GeneMark.hmm.

31 May 2018

1 reference

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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368933

Primary cell wall composition of bryophytes and charophytes.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368933

Systematic artifacts in metagenomes from complex microbial communities.

31 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3368933

10.1371/JOURNAL.PONE.0038571

28 November 2018

Identifiers

DOI

1 reference

636898

ADS bibcode

2012PLoSO...738571P

0 references

636898

1 reference

1 reference

1 reference