Next generation sequencing data of a defined microbial mock community (Q27309229)

26 June 2017

title

Next generation sequencing data of a defined microbial mock community (English)

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26 June 2017

8

Hans-Peter Klenk

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Tanja Woyke

14

object named as

Tanja Woyke

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Jan-Fang Cheng

12

object named as

Jan-Fang Cheng

1 reference

26 June 2017

13

Alex Copeland

1 reference

26 June 2017

11

Alicia Clum

1 reference

26 June 2017

5

Shweta Deshpande

1 reference

26 June 2017

9

Matthew Zane

1 reference

26 June 2017

10

Christopher Daum

1 reference

26 June 2017

Esther Singer

1

1 reference

26 June 2017

Bill Andreopoulos

2

1 reference

26 June 2017

Robert M Bowers

3

1 reference

26 June 2017

Janey Lee

4

1 reference

26 June 2017

Jennifer Chiniquy

6

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26 June 2017

Doina Ciobanu

7

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26 June 2017

publication date

27 September 2016

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26 June 2017

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26 June 2017

volume

3

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26 June 2017

page(s)

160081

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Creative Commons Attribution 4.0 International

26 June 2017

copyright license

start time

27 September 2016

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April 2022 Public Data File from Crossref

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

A framework for human microbiome research

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Structure, function and diversity of the healthy human microbiome

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

The advantages of SMRT sequencing

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

FastTree 2--approximately maximum-likelihood trees for large alignments

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

UCHIME improves sensitivity and speed of chimera detection

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

UPARSE: highly accurate OTU sequences from microbial amplicon reads

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

MeCorS: Metagenome-enabled error correction of single cell sequencing reads

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

High-resolution phylogenetic microbial community profiling

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Library preparation methodology can influence genomic and functional predictions in human microbiome research

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Evaluation of the Ion Torrent Personal Genome Machine for Gene-Targeted Studies Using Amplicons of the Nitrogenase Gene nifH

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Evaluation of 16S rDNA-based community profiling for human microbiome research

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5037974

31 May 2018

Identifiers

DOI

10.1038/SDATA.2016.81

1 reference

Dimensions Publication ID

26 June 2017

1036415091

0 references

OpenCitations bibliographic resource ID

3326245

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

3326245

1 reference