Interrogation of a context-specific transcription factor network identifies novel regulators of pluripotency (Q27329779)

25 June 2017

title

Interrogation of a context-specific transcription factor network identifies novel regulators of pluripotency (English)

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25 June 2017

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1 reference

17

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Celine Lefebvre

10

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Ritu Kushwaha

Ritu Kushwaha

1

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George J Bosl

George J Bosl

16

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Darren R Feldman

Darren R Feldman

15

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Andrea Califano

17

Andrea Califano

1 reference

25 June 2017

Nirmala Jagadish

2

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25 June 2017

Manjunath Kustagi

3

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25 June 2017

Mark J Tomishima

4

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25 June 2017

Geetu Mendiratta

5

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25 June 2017

Mukesh Bansal

6

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25 June 2017

Hyunjae R Kim

7

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25 June 2017

Pavel Sumazin

8

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25 June 2017

Mariano J Alvarez

9

1 reference

25 June 2017

Patricia Villagrasa-Gonzalez

11

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25 June 2017

Agnes Viale

12

1 reference

25 June 2017

James E Korkola

13

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25 June 2017

Jane Houldsworth

14

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25 June 2017

R S K Chaganti

18

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25 June 2017

Celine Lefebvre

10

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25 June 2017

language of work or name

English

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publication date

1 February 2015

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25 June 2017

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25 June 2017

volume

33

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25 June 2017

issue

2

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25 June 2017

page(s)

367-377

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Regulation of pluripotency and self- renewal of ESCs through epigenetic-threshold modulation and mRNA pruning

25 June 2017

cites work

1 reference

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21 March 2017

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An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma

21 March 2017

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A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers

21 March 2017

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21 March 2017

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21 March 2017

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UTF1, a novel transcriptional coactivator expressed in pluripotent embryonic stem cells and extra-embryonic cells

21 March 2017

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21 March 2017

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The homeoprotein Nanog is required for maintenance of pluripotency in mouse epiblast and ES cells

21 March 2017

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21 March 2017

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Dissecting self-renewal in stem cells with RNA interference

21 March 2017

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Prdm14 promotes germline fate and naive pluripotency by repressing FGF signalling and DNA methylation

21 March 2017

1 reference

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Tead4 is required for specification of trophectoderm in pre-implantation mouse embryos

21 March 2017

1 reference

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The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

21 March 2017

1 reference

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Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells

21 March 2017

1 reference

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Induction of Pluripotency in Mouse Somatic Cells with Lineage Specifiers

21 March 2017

1 reference

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

7 April 2017

1 reference

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affy--analysis of Affymetrix GeneChip data at the probe level

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Control of the embryonic stem cell state

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Reverse engineering of regulatory networks in human B cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Engineered zinc-finger transcription factors activate OCT4 (POU5F1), SOX2, KLF4, c-MYC (MYC) and miR302/367.

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

In vivo function and evolution of the eutherian-specific pluripotency marker UTF1.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Breaking through an epigenetic wall: re-activation of Oct4 by KRAB-containing designer zinc finger transcription factors.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Suppression of homeobox transcription factor VentX promotes expansion of human hematopoietic stem/multipotent progenitor cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Zfp296 is a novel, pluripotent-specific reprogramming factor

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Distinct lineage specification roles for NANOG, OCT4, and SOX2 in human embryonic stem cells

28 September 2017

1 reference

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ETV1, 4 and 5: an oncogenic subfamily of ETS transcription factors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Reverse engineering of TLX oncogenic transcriptional networks identifies RUNX1 as tumor suppressor in T-ALL.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Sequence-specific regulator Prdm14 safeguards mouse ESCs from entering extraembryonic endoderm fates

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Drawing networks of rejection - a systems biological approach to the identification of candidate genes in heart transplantation.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

The transcriptional network for mesenchymal transformation of brain tumours.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Integrated biochemical and computational approach identifies BCL6 direct target genes controlling multiple pathways in normal germinal center B cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Recruitment of polycomb group complexes and their role in the dynamic regulation of cell fate choice

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Identification and validation of a gene expression signature that predicts outcome in adult men with germ cell tumors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

The N-Myc-DLL3 cascade is suppressed by the ubiquitin ligase Huwe1 to inhibit proliferation and promote neurogenesis in the developing brain.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Master regulators used as breast cancer metastasis classifier.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

ChIP-on-chip significance analysis reveals large-scale binding and regulation by human transcription factor oncogenes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

A systems biology approach to prediction of oncogenes and molecular perturbation targets in B-cell lymphomas

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Reverse engineering cellular networks.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Gene expression patterns in human embryonic stem cells and human pluripotent germ cell tumors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

NetAffx: Affymetrix probesets and annotations

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Expression profiling of lineage differentiation in pluripotential human embryonal carcinoma cells.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Genetics and biology of adult human male germ cell tumors.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Germ cell neoplasms of the testis.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

Embryonic stem cell self-renewal pathways converge on the transcription factor Tfcp2l1

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305010

A precarious balance: pluripotency factors as lineage specifiers.

2 June 2018

1 reference

Gene expression-based classification of nonseminomatous male germ cell tumors.

21 January 2018

1 reference

The Validity of Comparative Experiments

21 January 2018

1 reference

On lines and planes of closest fit to systems of points in space

21 January 2018

1 reference

A PRC2-dependent repressive role of PRDM14 in human embryonic stem cells and induced pluripotent stem cell reprogramming.

21 January 2018

1 reference

Two Supporting Factors Greatly Improve the Efficiency of Human iPSC Generation

21 January 2018

1 reference

Early lineage segregation between epiblast and primitive endoderm in mouse blastocysts through the Grb2-MAPK pathway

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25336442

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Down-regulation of stem cell genes, including those in a 200-kb gene cluster at 12p13.31, is associated with in vivo differentiation of human male germ cell tumors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25336442

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/STEM.1870

1 reference

OpenCitations bibliographic resource ID

25 June 2017

2043076

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2043076

1 reference