ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis (Q27468686)

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Manoj Kumar

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Sandeep Kumar Dhanda

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Akanksha Rajput

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Sandeep Singh

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Abid Qureshi

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G. P. S. Raghava

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Gandharva Nagpal

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31 May 2020

Salman Sadullah Usmani

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author name string

Karambir Kaur

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31 May 2020

Manika Sehgal

5

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31 May 2020

Md Shoaib Khan

6

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31 May 2020

Isha Monga

7

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31 May 2020

Showkat Ahmad Dar

8

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31 May 2020

Anamika Thakur

12

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31 May 2020

Gazaldeep Kaur

13

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31 May 2020

Shivangi Sharma

14

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31 May 2020

Aman Bhardwaj

15

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language of work or name

English

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publication date

16 September 2016

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published in

Scientific Reports

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volume

6

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31 May 2020

page(s)

32713

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Creative Commons Attribution 4.0 International

31 May 2020

copyright license

start time

16 September 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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on focus list of Wikimedia project

WikiProject Zika Corpus

0 references

cites work

The crystal structure of Zika virus helicase: basis for antiviral drug design

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Structures of the Zika Virus Envelope Protein and Its Complex with a Flavivirus Broadly Protective Antibody

21 March 2017

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Genomic characterization and phylogenetic analysis of Zika virus circulating in the Americas

21 March 2017

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Phylogenetic analysis revealed the central roles of two African countries in the evolution and worldwide spread of Zika virus

21 March 2017

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Zika Virus Outbreak in Haiti in 2014: Molecular and Clinical Data

21 March 2017

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Structure of the thermally stable Zika virus

21 March 2017

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Zika virus NS1 structure reveals diversity of electrostatic surfaces among flaviviruses

21 March 2017

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Phylogeny of Zika Virus in Western Hemisphere, 2015

21 March 2017

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The 3.8 Å resolution cryo-EM structure of Zika virus

21 March 2017

1 reference

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Role of Glycans in Cancer Cells Undergoing Epithelial-Mesenchymal Transition

21 March 2017

1 reference

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INFECTIOUS DISEASE. The race for a Zika vaccine is on

21 March 2017

1 reference

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Zika vaccine could be in production by year’s end, says maker

21 March 2017

1 reference

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Possible Association Between Zika Virus Infection and Microcephaly — Brazil, 2015

21 March 2017

1 reference

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Zika and microcephaly: causation, correlation, or coincidence?

21 March 2017

1 reference

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Zika Virus in the Americas — Yet Another Arbovirus Threat

21 March 2017

1 reference

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Zika Virus Outbreak, Bahia, Brazil

21 March 2017

1 reference

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Potential sexual transmission of Zika virus

21 March 2017

1 reference

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Rapid spread of emerging Zika virus in the Pacific area

21 March 2017

1 reference

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Zika Virus, French Polynesia, South Pacific, 2013

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Zika virus infection complicated by Guillain-Barre syndrome--case report, French Polynesia, December 2013

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Molecular evolution of Zika virus during its emergence in the 20(th) century

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

DrugBank 4.0: shedding new light on drug metabolism

21 March 2017

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Quantitative real-time PCR detection of Zika virus and evaluation with field-caught mosquitoes

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0

21 March 2017

1 reference

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Improved method for linear B-cell epitope prediction using antigen's primary sequence

21 March 2017

1 reference

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RNA-guided human genome engineering via Cas9

21 March 2017

1 reference

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An integrated map of genetic variation from 1,092 human genomes

21 March 2017

1 reference

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Genetic characterization of Zika virus strains: geographic expansion of the Asian lineage

21 March 2017

1 reference

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Zika virus infection, Cambodia, 2010

21 March 2017

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VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Designing of highly effective complementary and mismatch siRNAs for silencing a gene

21 March 2017

1 reference

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siRNAs: potential therapeutic agents against hepatitis C virus

21 March 2017

1 reference

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Probable non-vector-borne transmission of Zika virus, Colorado, USA

21 March 2017

1 reference

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Identification of conformational B-cell Epitopes in an antigen from its primary sequence

21 March 2017

1 reference

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I-TASSER: a unified platform for automated protein structure and function prediction

21 March 2017

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Zika virus outside Africa

21 March 2017

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Genetic and serologic properties of Zika virus associated with an epidemic, Yap State, Micronesia, 2007

21 March 2017

1 reference

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One-step RT-PCR for detection of Zika virus

21 March 2017

1 reference

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Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses

21 March 2017

1 reference

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Comparative context analysis of codon pairs on an ORFeome scale

21 March 2017

1 reference

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Molecular biology of flaviviruses

21 March 2017

1 reference

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Zika virus. I. Isolations and serological specificity

21 March 2017

1 reference

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Multiple sequence alignment with the Clustal series of programs

21 March 2017

1 reference

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Health evaluation of free-ranging and semi-captive orangutans (Pongo pygmaeus pygmaeus) in Sabah, Malaysia

21 March 2017

1 reference

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West Nile virus envelope proteins: nucleotide sequence analysis of strains differing in mouse neuroinvasiveness

21 March 2017

1 reference

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A sero-epidemiological survey for certain arboviruses (Togaviridae) in Pakistan

21 March 2017

1 reference

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Yellow fever and Zika virus epizootics and enzootics in Uganda

21 March 2017

1 reference

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Serological survey for the prevalence of certain arboviruses in the human population of the south-east area of Central African Republic (author's transl)

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Flavivirus genome organization, expression, and replication

21 March 2017

1 reference

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Serological and entomological study on yellow fever in Sierra Leone

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

A serological survey of arboviruses in Gabon

21 March 2017

1 reference

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Zika virus infections in Nigeria: virological and seroepidemiological investigations in Oyo State

21 March 2017

1 reference

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Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Preclinical and clinical development of siRNA-based therapeutics

21 March 2017

1 reference

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Synthesis and antiviral activity of some new S-adenosyl-L-homocysteine derivatives

21 March 2017

1 reference

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CD-HIT: accelerated for clustering the next-generation sequencing data

21 March 2017

1 reference

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Evidence of RNAi in humans from systemically administered siRNA via targeted nanoparticles

7 April 2017

1 reference

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Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites

7 April 2017

1 reference

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Drug repositioning: identifying and developing new uses for existing drugs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

A web-based resource for designing therapeutics against Ebola Virus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Prediction of Immunomodulatory potential of an RNA sequence for designing non-toxic siRNAs and RNA-based vaccine adjuvants.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

siRNAmod: A database of experimentally validated chemically modified siRNAs

29 September 2017

1 reference

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ViralEpi v1.0: a high-throughput spectrum of viral epigenomic methylation profiles from diverse diseases

29 September 2017

1 reference

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SigMol: repertoire of quorum sensing signaling molecules in prokaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Recombinant and epitope-based vaccines on the road to the market and implications for vaccine design and production

29 September 2017

1 reference

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HPVbase--a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

CrisprGE: a central hub of CRISPR/Cas-based genome editing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Cas9-mediated targeting of viral RNA in eukaryotic cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Efficacy and safety of RTS,S/AS01 malaria vaccine with or without a booster dose in infants and children in Africa: final results of a phase 3, individually randomised, controlled trial

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Prediction and analysis of quorum sensing peptides based on sequence features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Protein glycosylation in cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

The I-TASSER Suite: protein structure and function prediction.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Comparative Protein Structure Modeling Using MODELLER

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

C-mannosylation of human hyaluronidase 1: possible roles for secretion and enzymatic activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Designing of interferon-gamma inducing MHC class-II binders.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Comparative analysis of codon usage bias and codon context patterns between dipteran and hymenopteran sequenced genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Immune epitope database analysis resource

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Current progress of siRNA/shRNA therapeutics in clinical trials

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Exploiting drug-disease relationships for computational drug repositioning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

RNAi and small interfering RNAs in human disease therapeutic applications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Genome‑based vaccine development: A short cut for the future

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Postexposure protection of non-human primates against a lethal Ebola virus challenge with RNA interference: a proof-of-concept study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

RNAi-based therapeutics-current status, challenges and prospects

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Micromanagement of the immune system by microRNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Epitope-based vaccine against influenza

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

NetCGlyc 1.0: prediction of mammalian C-mannosylation sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Virus glycosylation: role in virulence and immune interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Memory efficient folding algorithms for circular RNA secondary structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Inhibition of Virus Replication by RNA Interference

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Epitope-based vaccines: an update on epitope identification, vaccine design and delivery

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Prediction of glycosylation across the human proteome and the correlation to protein function.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Ribavirin's antiviral mechanism of action: lethal mutagenesis?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Concepts and principles of O-linked glycosylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Evaluation of hepatitis C virus protein epitopes for vaccine development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Prediction of IL4 inducing peptides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

VIRsiRNApred: a web server for predicting inhibition efficacy of siRNAs targeting human viruses

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

AVPpred: collection and prediction of highly effective antiviral peptides.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5025660

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

2 June 2018

1 reference

ProPred1: prediction of promiscuous MHC Class-I binding sites.

21 January 2018

1 reference

Prediction of CTL epitopes using QM, SVM and ANN techniques.

21 January 2018

1 reference

ProPred: prediction of HLA-DR binding sites.

21 January 2018

1 reference

Identification of viral microRNAs

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27633273

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP32713

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27633273%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

31 May 2020

1029745500

0 references

Fatcat ID

release_etluvoqijjcedmhqznaoaiangy

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27633273%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

PubMed publication ID

27633273

2 references