Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus (Q27472963)

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Arvind H Patel

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object named as

Arvind H Patel

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author name string

Jonny Wood

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David J Evans

Synthesis of a novel hepatitis C virus protein by ribosomal frameshift

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language of work or name

English

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publication date

June 2002

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published in

RNA

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volume

8

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issue

6

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page(s)

824-41

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cites work

1 reference

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Evidence for a new hepatitis C virus antigen encoded in an overlapping reading frame

21 March 2017

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Efficient Translation Initiation Is Required for Replication of Bovine Viral Diarrhea Virus Subgenomic Replicons

21 March 2017

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Specific Interaction of Hepatitis C Virus Protease/Helicase NS3 with the 3'-Terminal Sequences of Viral Positive- and Negative-Strand RNA

21 March 2017

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Hepatitis C Virus 3'X Region Interacts with Human Ribosomal Proteins

21 March 2017

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Identification of a cis-acting replication element within the poliovirus coding region

21 March 2017

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A coding RNA sequence acts as a replication signal in cardioviruses

21 March 2017

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Structural constraints on RNA virus evolution

21 March 2017

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Natural variation in translational activities of the 5' nontranslated RNAs of hepatitis C virus genotypes 1a and 1b: evidence for a long-range RNA-RNA interaction outside of the internal ribosomal entry site

21 March 2017

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In vivo analysis of the 3' untranslated region of the hepatitis C virus after in vitro mutagenesis of an infectious cDNA clone

21 March 2017

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The rhinovirus type 14 genome contains an internally located RNA structure that is required for viral replication

21 March 2017

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The 3'-untranslated region of hepatitis C virus RNA enhances translation from an internal ribosomal entry site

21 March 2017

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Automatic detection of conserved RNA structure elements in complete RNA virus genomes

21 March 2017

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Stability of a stem-loop involving the initiator AUG controls the efficiency of internal initiation of translation on hepatitis C virus RNA.

21 March 2017

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Identification of two flavivirus-like genomes in the GB hepatitis agent

21 March 2017

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Internal ribosome entry site within hepatitis C virus RNA

21 March 2017

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Efficient initiation of HCV RNA replication in cell culture

21 March 2017

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Replication of subgenomic hepatitis C virus RNAs in a hepatoma cell line

21 March 2017

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 March 2017

1 reference

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Isolation of a cDNA clone derived from a blood-borne non-A, non-B viral hepatitis genome

21 March 2017

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An assay for circulating antibodies to a major etiologic virus of human non-A, non-B hepatitis

21 March 2017

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Unique features of internal initiation of hepatitis C virus RNA translation

21 March 2017

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Structural requirements for initiation of translation by internal ribosome entry within genome-length hepatitis C virus RNA

7 April 2017

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Genetic and biochemical studies of poliovirus cis-acting replication element cre in relation to VPg uridylylation

7 April 2017

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Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting

29 September 2017

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No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

29 September 2017

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A three-hybrid system to detect RNA-protein interactions in vivo

29 September 2017

1 reference

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Poliovirus chimeras replicating under the translational control of genetic elements of hepatitis C virus reveal unusual properties of the internal ribosomal entry site of hepatitis C virus

29 September 2017

1 reference

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Reading two bases twice: mammalian antizyme frameshifting in yeast.

29 September 2017

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Characterization of a murine coronavirus defective interfering RNA internal cis-acting replication signal.

29 September 2017

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Group specific sequences and conserved secondary structures at the 3' end of HCV genome and its implication for viral replication

29 September 2017

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Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal

29 September 2017

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Evolutionarily conserved RNA secondary structures in coding and non-coding sequences at the 3' end of the hepatitis G virus/GB-virus C genome.

2 June 2018

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Secondary structure alone is generally not statistically significant for the detection of noncoding RNAs.

27 November 2018

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An internal polypyrimidine-tract-binding protein-binding site in the hepatitis C virus RNA attenuates translation, which is relieved by the 3'-untranslated sequence

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370300

Characteristics of nucleotide substitution in the hepatitis C virus genome: constraints on sequence change in coding regions at both ends of the genome.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370300

The origin of hepatitis C virus genotypes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370300

Reduction of synonymous substitutions in the core protein gene of hepatitis C virus

27 November 2018

1 reference