Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments (Q27477912)

2

0 references

Thomas Briese

7

0 references

Jeffrey Hui

4

Jeffrey Hui

0 references

Vishal Kapoor

3

Vishal Kapoor

0 references

Omar J Jabado

1

Omar J Jabado

0 references

Neil Renwick

5

Neil Renwick

0 references

Junhui Zhai

6

MuPlex: multi-objective multiplex PCR assay design

Junhui Zhai

0 references

language of work or name

English

0 references

publication date

2006

0 references

published in

Nucleic Acids Research

0 references

volume

34

0 references

issue

22

0 references

page(s)

6605-11

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

CODEHOP-mediated PCR - a powerful technique for the identification and characterization of viral genomes

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Multiple sequence alignment with the Clustal series of programs

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Primer3 on the WWW for general users and for biologist programmers

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Identification of a Kunjin/West Nile-like flavivirus in brains of patients with New York encephalitis

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Open source clustering software

21 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

MassTag polymerase chain reaction for differential diagnosis of viral hemorrhagic fever

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Diagnostic system for rapid and sensitive differential detection of pathogens

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Exotic emerging viral diseases: progress and challenges

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Amplicon: software for designing PCR primers on aligned DNA sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

PROBEmer: A web-based software tool for selecting optimal DNA oligos

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Molecular diagnostics of viral hemorrhagic fevers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Novel and challenging infections of man. A brief overview.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Detection of new DNA polymerase genes of known and potentially novel herpesviruses by PCR with degenerate and deoxyinosine-substituted primers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

HLA serum screening based on an heuristic solution of the set cover problem

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

The degenerate primer design problem.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

GeneFisher--software support for the detection of postulated genes.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Highly scalable algorithms for robust string barcoding.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Integrated minimum-set primers and unique probe design algorithms for differential detection on symptom-related pathogens.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Efficient RNAi-based gene family knockdown via set cover optimization.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Analysis of the medium (M) segment sequence of Guaroa virus and its comparison to other orthobunyaviruses

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

MELTING, computing the melting temperature of nucleic acid duplex.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Efficient primer design algorithms.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

Design strategies and performance of custom DNA sequencing primers

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1747188

A Greedy Algorithm for Minimizing the Number of Primers in Multiple PCR Experiments

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17135211

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Greedy Algorithms for Finding a Small Set of Primers Satisfying Cover and Length Resolution Conditions in PCR Experiments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17135211

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL966

1 reference

release_vobtj5qm4jbefe2q46wk4xdm7q

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vobtj5qm4jbefe2q46wk4xdm7q

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

1 reference

PubMed publication ID

17135211

1 reference