Evidence of Recombination in Intrapatient Populations of Hepatitis C Virus (Q27486806)

9

object named as

Fernando González-Candelas

Fernando

González-Candelas

1 reference

19 October 2023

6

María José Gosalbes

María José

Gosalbes

1 reference

19 October 2023

Manuela Torres-Puente

object named as

Manuela Torres-Puente

3

Manuela

Torres-Puente

1 reference

19 October 2023

María Alma Bracho

4

María Alma

Bracho

1 reference

19 October 2023

Vicente Sentandreu

1

Vicente

Sentandreu

1 reference

19 October 2023

Nuria Jiménez-Hernández

2

Nuria

Jiménez-Hernández

1 reference

19 October 2023

Ana Valero

5

Ana

Valero

1 reference

19 October 2023

Enrique Ortega

7

Enrique

Creative Commons Attribution 4.0 International

Ortega

1 reference

19 October 2023

language of work or name

English

0 references

publication date

18 September 2008

0 references

published in

PLOS One

0 references

volume

3

0 references

issue

9

0 references

page(s)

e3239

0 references

copyright license

start time

18 September 2008

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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New Natural Intergenotypic (2/5) Recombinant of Hepatitis C Virus

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Evidence of recombination in quasispecies populations of a Hepatitis C Virus patient undergoing anti-viral therapy

20 March 2017

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Identification of a Naturally Occurring Recombinant Genotype 2/6 Hepatitis C Virus

20 March 2017

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Compartmentalization of hepatitis C virus genotypes between plasma and peripheral blood mononuclear cells

20 March 2017

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Effect of oligonucleotide primers in determining viral variability within hosts

20 March 2017

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Sustained virological response in hepatitis C virus type 1b infected patients is predicted by the number of mutations within the NS5A-ISDR: a meta-analysis focused on geographical differences

20 March 2017

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A Natural Intergenotypic Recombinant of Hepatitis C Virus Identified in St. Petersburg

20 March 2017

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RNA recombination between persisting pestivirus and a vaccine strain: generation of cytopathogenic virus and induction of lethal disease

20 March 2017

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Conservation of the Conformation and Positive Charges of Hepatitis C Virus E2 Envelope Glycoprotein Hypervariable Region 1 Points to a Role in Cell Attachment

20 March 2017

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Clinical significance of hepatitis C virus genotypes

20 March 2017

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Widespread intra-serotype recombination in natural populations of dengue virus

20 March 2017

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20 March 2017

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Evidence that hepatitis C virus resistance to interferon is mediated through repression of the PKR protein kinase by the nonstructural 5A protein

20 March 2017

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Humoral immune response to hypervariable region 1 of the putative envelope glycoprotein (gp70) of hepatitis C virus

20 March 2017

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Comparison of full-length sequences of interferon-sensitive and resistant hepatitis C virus 1b. Sensitivity to interferon is conferred by amino acid substitutions in the NS5A region

20 March 2017

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Consensus proposals for a unified system of nomenclature of hepatitis C virus genotypes

20 March 2017

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Global epidemiology of hepatitis C virus infection

20 March 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

20 March 2017

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TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

20 March 2017

1 reference

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Hepatitis C virus infection

20 March 2017

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MODELTEST: testing the model of DNA substitution

20 March 2017

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Classification of hepatitis C virus into six major genotypes and a series of subtypes by phylogenetic analysis of the NS-5 region

20 March 2017

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Genetic diversity and evolution of hepatitis C virus--15 years on

20 March 2017

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Peginterferon-alpha2a and ribavirin combination therapy in chronic hepatitis C: a randomized study of treatment duration and ribavirin dose

7 April 2017

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The outcome of acute hepatitis C predicted by the evolution of the viral quasispecies

7 April 2017

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Mutations in the nonstructural protein 5A gene and response to interferon in patients with chronic hepatitis C virus 1b infection

7 April 2017

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Analyzing the mosaic structure of genes

7 April 2017

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Full-length sequence of a hepatitis C virus genome having poor homology to reported isolates: comparative study of four distinct genotypes

7 April 2017

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Evidence for immune selection of hepatitis C virus (HCV) putative envelope glycoprotein variants: potential role in chronic HCV infections

7 April 2017

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Compartmentalization of hepatitis C virus (HCV) during HCV/HIV coinfection

7 April 2017

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Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy

29 September 2017

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Hepatitis C virus coinfection and superinfection

29 September 2017

1 reference

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Susceptibility to antiretroviral drugs of CRF01_AE, CRF02_AG, and subtype C viruses from untreated patients of Africa and Asia: comparative genotypic and phenotypic data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Chronic hepatitis C and genotyping: the clinical significance of determining HCV genotypes.

29 September 2017

1 reference

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Quasispecies heterogeneity within the E1/E2 region as a pretreatment variable during pegylated interferon therapy of chronic hepatitis C virus infection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

The hepatitis C virus epidemic among injecting drug users.

29 September 2017

1 reference

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Identification of unique hepatitis C virus quasispecies in the central nervous system and comparative analysis of internal translational efficiency of brain, liver, and serum variants.

29 September 2017

1 reference

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The population genetics and evolutionary epidemiology of RNA viruses

29 September 2017

1 reference

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The proteins of the Hepatitis C virus: their features and interactions with intracellular protein phosphorylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

The extent of homologous recombination in members of the genus Flavivirus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Clinical significance of hepatitis C virus genotypes and quasispecies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Evolutionary aspects of recombination in RNA viruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Molecular mechanisms of interferon resistance mediated by viral-directed inhibition of PKR, the interferon-induced protein kinase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Stimulation and suppression of PCR-mediated recombination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Statistical analysis of combined substitutions in nonstructural 5A region of hepatitis C virus and interferon response

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

The "interferon sensitivity determining region" of hepatitis C virus is a stable sequence element

2 June 2018

1 reference

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The prognostic relevance of the nonstructural 5A gene interferon sensitivity determining region is different in infections with genotype 1b and 3a isolates of hepatitis C virus

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Mutations of hepatitis C virus 1b NS5A 2209-2248 amino acid sequence do not predict the response to recombinant interferon-alfa therapy in French patients

2 June 2018

1 reference

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Mutations in the nonstructural 5A region of hepatitis C virus and response of chronic hepatitis C to interferon alfa.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Hepatitis C virus genome complexity correlates with response to interferon therapy: a study in French patients with chronic hepatitis C.

2 June 2018

1 reference

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Mutations in the nonstructural 5A gene of European hepatitis C virus isolates and response to interferon alfa

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

A structurally flexible and antigenically variable N-terminal domain of the hepatitis C virus E2/NS1 protein: implication for an escape from antibody.

2 June 2018

1 reference

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The degree of variability in the amino terminal region of the E2/NS1 protein of hepatitis C virus correlates with responsiveness to interferon therapy in viremic patients

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Epidemic dynamics of two coexisting hepatitis C virus subtypes

2 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

The origin of hepatitis C virus genotypes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Discrepancy of hepatitis C virus genotypes as determined by phylogenetic analysis of partial NS5 and core sequences

21 January 2018

1 reference

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Mixed infection with two types of hepatitis C virus is probably a rare event

21 January 2018

1 reference

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Full-length open reading frame of a recombinant hepatitis C virus strain from St Petersburg: proposed mechanism for its formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Evidence of intratypic recombination in natural populations of hepatitis C virus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

A natural inter-genotypic (2b/1b) recombinant of hepatitis C virus in the Philippines

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Homologous recombination in GB virus C/hepatitis G virus

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Absence of HCV viral recombination following superinfection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Factors affecting PCR-mediated recombination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Hepatitis C flare due to superinfection by genotype 4 in an HCV genotype 1b chronic carrier

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Frequent hepatitis C virus superinfection in injection drug users

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Second hepatitis C replication compartment indicated by viral dynamics during liver transplantation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Clinical and therapeutic implications of hepatitis C virus compartmentalization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Possible compartmentalization of hepatitis C viral replication in the genital tract of HIV-1-coinfected women

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Assessment of hepatitis C virus quasispecies heterogeneity by gel shift analysis: correlation with response to interferon therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Pretreatment virus load and multiple amino acid substitutions in the interferon sensitivity-determining region predict the outcome of interferon treatment in patients with chronic genotype 1b hepatitis C virus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Number and position of mutations in the interferon (IFN) sensitivity-determining region of the gene for nonstructural protein 5A correlate with IFN efficacy in hepatitis C virus genotype 1b infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

A mutation in the interferon sensitivity-determining region is associated with responsiveness to interferon-ribavirin combination therapy in chronic hepatitis patients infected with a Japan-specific subtype of hepatitis C virus genotype 1B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Mutations in the NS5A gene of hepatitis C virus in North American patients infected with HCV genotype 1a or 1b.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Long-term response to interferon alpha is unrelated to "interferon sensitivity determining region" variability in patients with chronic hepatitis C virus-1b infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Contribution of insertions and deletions to the variability of hepatitis C virus populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Genetic variability in hepatitis C virus and its role in antiviral treatment response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

A comprehensive system for consistent numbering of HCV sequences, proteins and epitopes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

A model for the hepatitis C virus envelope glycoprotein E2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Study of a novel hypervariable region in hepatitis C virus (HCV) E2 envelope glycoprotein

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Hepatitis C virus E2 and NS5A region variability during sequential treatment with two interferon-alpha preparations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

A new look at the statistical model identification

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

RDP2: recombination detection and analysis from sequence alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

RDP: detection of recombination amongst aligned sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Inferring confidence sets of possibly misspecified gene trees.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Sequence analysis of the NS5A protein of European hepatitis C virus 1b isolates and relation to interferon sensitivity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

A proposed system for the nomenclature of hepatitis C viral genotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0003239

Response to retreatment with interferon-alpha plus ribavirin in chronic hepatitis C patients is independent of the NS5A gene nucleotide sequence.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Mutations in the NS5A region do not predict interferon-responsiveness in american patients infected with genotype 1b hepatitis C virus

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

A proposed system for the nomenclature of hepatitis C viral genotypes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Diversity of quasispecies in various disease stages of chronic hepatitis C virus infection and its significance in interferon treatment

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2528950

Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18800167

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hepatitis C virus infection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18800167

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Possible emergence of new geminiviruses by frequent recombination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18800167

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0003239

1 reference

3891069

ADS bibcode

2008PLoSO...3.3239S

0 references

3891069

1 reference

1 reference

1 reference