Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses (Q27487338)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18799591%20AND%20SRC:MED&resulttype=core&format=json

14 January 2020

title

Bioinformatic and physical characterizations of genome-scale ordered RNA structure in mammalian RNA viruses (English)

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14 January 2020

0 references

5

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14 January 2020

Selena M Sagan

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2

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14 January 2020

David J Evans

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4

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14 January 2020

3

John P Pezacki

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14 January 2020

author name string

Matthew Davis

series ordinal

1

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14 January 2020

publication date

17 September 2008

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14 January 2020

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14 January 2020

volume

82

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14 January 2020

issue

23

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14 January 2020

page(s)

11824-11836

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Bioinformatic and functional analysis of RNA secondary structure elements among different genera of human and animal caliciviruses

14 January 2020

cites work

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20 March 2017

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20 March 2017

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Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

20 March 2017

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The V proteins of paramyxoviruses bind the IFN-inducible RNA helicase, mda-5, and inhibit its activation of the IFN-beta promoter

20 March 2017

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Detection of genome-scale ordered RNA structure (GORS) in genomes of positive-stranded RNA viruses: Implications for virus evolution and host persistence

20 March 2017

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20 March 2017

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Full-length GB virus C (Hepatitis G virus) RNA transcripts are infectious in primary CD4-positive T cells

20 March 2017

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Identification of a cis-acting replication element within the poliovirus coding region

20 March 2017

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Structural constraints on RNA virus evolution

20 March 2017

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RNA-protein interactions in regulation of picornavirus RNA translation

20 March 2017

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Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

20 March 2017

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RIG-I-mediated antiviral responses to single-stranded RNA bearing 5'-phosphates

20 March 2017

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Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA

20 March 2017

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The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses

20 March 2017

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

20 March 2017

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5'-Triphosphate RNA is the ligand for RIG-I

20 March 2017

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20 March 2017

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Single-stranded antisense siRNAs guide target RNA cleavage in RNAi

20 March 2017

1 reference

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Structure, function, and evolution of adenovirus virus-associated RNAs

20 March 2017

1 reference

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Interferons and viruses: an interplay between induction, signalling, antiviral responses and virus countermeasures

20 March 2017

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Identification of microRNAs of the herpesvirus family

7 April 2017

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Efficient replication of the genotype 2a hepatitis C virus subgenomic replicon

7 April 2017

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Murine noroviruses comprising a single genogroup exhibit biological diversity despite limited sequence divergence

7 April 2017

1 reference

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Evaluation of chemical labeling strategies for monitoring HCV RNA using vibrational microscopy

29 September 2017

1 reference

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Molecular basis for target RNA recognition and cleavage by human RISC.

29 September 2017

1 reference

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Predicting siRNA efficiency

29 September 2017

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Is RNA interference involved in intrinsic antiviral immunity in mammals?

29 September 2017

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The gene-silencing efficiency of siRNA is strongly dependent on the local structure of mRNA at the targeted region

29 September 2017

1 reference

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Complementation of a deletion in the rubella virus p150 nonstructural protein by the viral capsid protein

29 September 2017

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STAT1-dependent innate immunity to a Norwalk-like virus

29 September 2017

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Identification and characterization of a cis-acting replication element (cre) adjacent to the internal ribosome entry site of foot-and-mouth disease virus

29 September 2017

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29 September 2017

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No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

29 September 2017

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RNA secondary structure prediction using stochastic context-free grammars and evolutionary history

29 September 2017

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Encapsidation studies of poliovirus subgenomic replicons

29 September 2017

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Scanning force microscopy of DNA deposited onto mica: equilibration versus kinetic trapping studied by statistical polymer chain analysis.

29 September 2017

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Rescue of a segmented negative-strand RNA virus entirely from cloned complementary DNAs

29 September 2017

1 reference

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Comparative analysis of the regulation of the interferon-inducible protein kinase PKR by Epstein-Barr virus RNAs EBER-1 and EBER-2 and adenovirus VAI RNA

29 September 2017

1 reference

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Tat-responsive region RNA of human immunodeficiency virus 1 can prevent activation of the double-stranded-RNA-activated protein kinase

29 September 2017

1 reference

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The Brome mosaic virus subgenomic promoter hairpin is structurally similar to the iron-responsive element and functionally equivalent to the minus-strand core promoter stem-loop C.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2583674

Size, shape, and flexibility of RNA structures

2 June 2018

1 reference

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Persistent infection with and serologic cross-reactivity of three novel murine noroviruses.

27 November 2018

1 reference

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Atomic force microscopy analysis of icosahedral virus RNA.

27 November 2018

1 reference

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TectoRNA and 'kissing-loop' RNA: atomic force microscopy of self-assembling RNA structures

27 November 2018

1 reference

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Multiple secondary structure rearrangements during HIV-1 RNA dimerization

27 November 2018

1 reference

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27 November 2018

Identifiers

DOI

10.1128/JVI.01078-08

2 references

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release_47ot5qfktffhfmo4dcwgbj7dnu

14 January 2020

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/47ot5qfktffhfmo4dcwgbj7dnu

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

2 references

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14 January 2020

PubMed publication ID

18799591

2 references