Crystal structure of NAD+-dependent DNA ligase: modular architecture and functional implications (Q27621613)

2

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H K Song

3

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J Moon

4

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J K Yang

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H K Kim

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S T Kwon

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S W Suh

Solution structure of the single-strand break repair protein XRCC1 N-terminal domain

8

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language of work or name

English

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publication date

1 March 2000

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published in

The EMBO Journal

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volume

19

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issue

5

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page(s)

1119-29

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cites work

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Crystal structure of the Oxytricha nova telomere end binding protein complexed with single strand DNA

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Crystal structure of an octameric RuvA-Holliday junction complex

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Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 A resolution

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Structure of a complex between a cap analogue and mRNA guanylyl transferase demonstrates the structural chemistry of RNA capping

20 March 2017

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An interaction between DNA ligase I and proliferating cell nuclear antigen: implications for Okazaki fragment synthesis and joining

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Major domain swiveling revealed by the crystal structures of complexes of E. coli Rep helicase bound to single-stranded DNA and ADP

20 March 2017

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Crystal structure of the homo-tetrameric DNA binding domain of Escherichia coli single-stranded DNA-binding protein determined by multiwavelength x-ray diffraction on the selenomethionyl protein at 2.9-A resolution

20 March 2017

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X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes

20 March 2017

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The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold

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Structure of the single-stranded-DNA-binding domain of replication protein A bound to DNA

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Structural basis for the excision repair of alkylation-damaged DNA

20 March 2017

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Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7

20 March 2017

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Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I

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The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation

20 March 2017

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Molecular cloning and expression of human cDNAs encoding a novel DNA ligase IV and DNA ligase III, an enzyme active in DNA repair and recombination

20 March 2017

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Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

20 March 2017

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The basis for half-site specificity explored through a non-cognate steroid receptor-DNA complex

20 March 2017

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Mammalian DNA ligase III: molecular cloning, chromosomal localization, and expression in spermatocytes undergoing meiotic recombination

20 March 2017

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Raster3D: photorealistic molecular graphics

20 March 2017

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20 March 2017

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Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

21 January 2018

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The CCP4 suite: programs for protein crystallography

20 March 2017

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Automated MAD and MIR structure solution

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

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LIGPLOT: a program to generate schematic diagrams of protein-ligand interactions

20 March 2017

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

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Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

20 March 2017

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XRCC1 protein interacts with one of two distinct forms of DNA ligase III

20 March 2017

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RNA capping enzyme and DNA ligase: a superfamily of covalent nucleotidyl transferases

20 March 2017

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A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins

20 March 2017

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From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair

7 April 2017

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OB(oligonucleotide/oligosaccharide binding)-fold: common structural and functional solution for non-homologous sequences

7 April 2017

1 reference

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Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

7 April 2017

1 reference

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DNA ligase III is recruited to DNA strand breaks by a zinc finger motif homologous to that of poly(ADP-ribose) polymerase. Identification of two functionally distinct DNA binding regions within DNA ligase III.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=305650

Recognition of spatial motifs in protein structures

29 September 2017

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Biochemical properties of a high fidelity DNA ligase from Thermus species AK16D

29 September 2017

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RNA binding strategies of ribosomal proteins

29 September 2017

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Role of the DNA ligase III zinc finger in polynucleotide binding and ligation.

29 September 2017

1 reference

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Structure and function of mammalian DNA ligases

29 September 2017

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The structure of the translational initiation factor IF1 from E.coli contains an oligomer-binding motif

29 September 2017

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Identification of essential residues in Thermus thermophilus DNA ligase

29 September 2017

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Improving the fidelity of Thermus thermophilus DNA ligase

29 September 2017

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The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

29 September 2017

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Structural mechanisms for domain movements in proteins

29 September 2017

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Protein motifs 5. Zinc fingers

29 September 2017

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DNA ligase: structure, mechanism, and function

29 September 2017

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The second zinc-finger domain of poly(ADP-ribose) polymerase determines specificity for single-stranded breaks in DNA.

29 September 2017

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Genetic disease detection and DNA amplification using cloned thermostable ligase

29 September 2017

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29 September 2017

Mammalian DNA ligases

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Zinc fingers are sticking together

29 September 2017

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2 June 2018

Mammalian DNA ligases

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DNA polymerase beta in abasic site repair: a structurally conserved helix-hairpin-helix motif in lesion detection by base excision repair enzymes

2 June 2018

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[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

2 June 2018

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Solution Structure of Prokaryotic Ribosomal Protein S17 by High-Resolution NMR Spectroscopy†

21 January 2018

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MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

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PROCHECK: a program to check the stereochemical quality of protein structures

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Footprinting of Chlorella virus DNA ligase bound at a nick in duplex DNA.

21 January 2018

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Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

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Cloning, nucleotide sequence, and expression of the DNA ligase-encoding gene from Thermus filiformis.

21 January 2018

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Crystallization and preliminary x-ray crystallographic analysis of NAD+-dependent DNA ligase from Thermus filiformis

27 November 2018

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12 December 2020

Analysis of the formation of AMP-DNA intermediate and the successive reaction by human DNA ligases I and II

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12 December 2020

A unified polymerase mechanism for nonhomologous DNA and RNA polymerases

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12 December 2020

Surface-exposed phenylalanines in the RNP1/RNP2 motif stabilize the cold-shock protein CspB from Bacillus subtilis

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12 December 2020

Functional domains of an NAD + -dependent DNA ligase 1 1Edited by A. R. Fersht

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12 December 2020

Identifiers

DOI

10.1093/EMBOJ/19.5.1119

1 reference

1 reference

1 reference

PubMed publication ID

10698952

1 reference