Single-site mutations induce 3D domain swapping in the B1 domain of protein L from Peptostreptococcus magnus (Q27636225)

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D E Kim

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K Johnsen

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K Y Zhang

3D domain swapping: a mechanism for oligomer assembly

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publication date

November 2001

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published in

Structure

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volume

9

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issue

11

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page(s)

1017-27

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cites work

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Protein aggregation: folding aggregates, inclusion bodies and amyloid

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A proposed structural model for amyloid fibril elongation: domain swapping forms an interdigitating beta-structure polymer

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Is the function of the cdc2 kinase subunit proteins tuned by their propensities to oligomerize? Conformational states in solution of the cdc2 kinase partners p13suc1 and p9cksphy

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Domain swapping in inducible nitric-oxide synthase. Electron transfer occurs between flavin and heme groups located on adjacent subunits in the dimer.

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A potential allosteric subsite generated by domain swapping in bovine seminal ribonuclease

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The crystal structure of a 3D domain-swapped dimer of RNase A at a 2.1-A resolution

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A domain-swapped RNase A dimer with implications for amyloid formation

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Bovine seminal ribonuclease: structure at 1.9 A resolution

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Structure of the cro repressor from bacteriophage lambda and its interaction with DNA.

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Crystal structure of the repetitive segments of spectrin

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Domain swapping creates a third putative combining site in bovine odorant binding protein dimer

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Human CksHs2 atomic structure: a role for its hexameric assembly in cell cycle control

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Crystal structure of the yeast cell-cycle control protein, p13suc1, in a strand-exchanged dimer

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Domain swapping: entangling alliances between proteins

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One-step evolution of a dimer from a monomeric protein

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High resolution structure of an oligomeric eye lens beta-crystallin. Loops, arches, linkers and interfaces in beta B2 dimer compared to a monomeric gamma-crystallin

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Sequence conservation provides the best prediction of the role of proline residues in p13suc1 1 1Edited by J. Thornton

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Three-dimensional domain swapping in p13suc1 occurs in the unfolded state and is controlled by conserved proline residues.

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Three-dimensional solution structure of an immunoglobulin light chain-binding domain of protein L. Comparison with the IgG-binding domains of protein G

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Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution

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Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein.

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A breakdown of symmetry in the folding transition state of protein L

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Conformation of Polypeptides and Proteins

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Evidence for strained interactions between side-chains and the polypeptide backbone.

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Role of amino acid residues at turns in the conformational stability and folding of human lysozyme

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SIRIUS. An automated method for the analysis of the preferred packing arrangements between protein groups

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Refined structure of dimeric diphtheria toxin at 2.0 A resolution

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The anatomy and taxonomy of protein structure

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Analysis, design and modification of loop regions in proteins

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Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping

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Solution structure of cyanovirin-N, a potent HIV-inactivating protein

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Proline-dependent oligomerization with arm exchange

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Crystallization and preliminary X-ray diffraction studies of mutants of B1 IgG-binding domain of protein L fromPeptostreptococcus magnus

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Improved methods for building protein models in electron density maps and the location of errors in these models

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Rapid automated molecular replacement by evolutionary search

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Solvation energy in protein folding and binding

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