Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase (Q27637560)

2

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J Lescar

3

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N Expert-Bezançon

4

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N Jourdan

5

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N Sukumar

6

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F Rougeon

7

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C Papanicolaou

Crystal structure of a DinB lesion bypass DNA polymerase catalytic fragment reveals a classic polymerase catalytic domain

8

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language of work or name

English

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publication date

1 February 2002

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published in

The EMBO Journal

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volume

21

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issue

3

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page(s)

427-39

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cites work

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Two novel human and mouse DNA polymerases of the polX family

20 March 2017

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Structure of yeast poly(A) polymerase alone and in complex with 3'-dATP

20 March 2017

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Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP

20 March 2017

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Association of terminal deoxynucleotidyl transferase with Ku

20 March 2017

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Structure of an XRCC1 BRCT domain: a new protein-protein interaction module

20 March 2017

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

20 March 2017

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Crystal structures of human DNA polymerase beta complexed with gapped and nicked DNA: evidence for an induced fit mechanism

20 March 2017

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Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69

20 March 2017

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Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis

20 March 2017

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A structural basis for metal ion mutagenicity and nucleotide selectivity in human DNA polymerase beta

20 March 2017

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Crystal structures of human DNA polymerase beta complexed with DNA: implications for catalytic mechanism, processivity, and fidelity

20 March 2017

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A general two-metal-ion mechanism for catalytic RNA

20 March 2017

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Molecular structure of kanamycin nucleotidyltransferase determined to 3.0-A resolution

20 March 2017

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2.3 A crystal structure of the catalytic domain of DNA polymerase beta

20 March 2017

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Structural investigation of the antibiotic and ATP-binding sites in kanamycin nucleotidyltransferase

20 March 2017

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Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism

20 March 2017

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Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

20 March 2017

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Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP

20 March 2017

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The relation between the divergence of sequence and structure in proteins

20 March 2017

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The CCP4 suite: programs for protein crystallography

20 March 2017

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ESPript: analysis of multiple sequence alignments in PostScript

20 March 2017

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Further additions to MolScript version 1.4, including reading and contouring of electron-density maps

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

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Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Expression of human terminal deoxynucleotidyl transferase in Escherichia coli

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Mutational analysis of residues in the nucleotide binding domain of human terminal deoxynucleotidyl transferase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

The mechanism of V(D)J joining: lessons from molecular, immunological, and comparative analyses

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

20 March 2017

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

DNA polymerase lambda (Pol lambda), a novel eukaryotic DNA polymerase with a potential role in meiosis

21 January 2018

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

20 March 2017

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A superfamily of conserved domains in DNA damage-responsive cell cycle checkpoint proteins

7 April 2017

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From BRCA1 to RAP1: a widespread BRCT module closely associated with DNA repair

7 April 2017

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DNA polymerase mu (Pol mu), homologous to TdT, could act as a DNA mutator in eukaryotic cells

7 April 2017

1 reference

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Terminal deoxynucleotidyl transferase. catalysis of DNA (oligodeoxynucleotide) phosphorylation

29 September 2017

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An open and closed case for all polymerases.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Metal-binding sites in the major groove of a large ribozyme domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Ku86-deficient mice exhibit severe combined immunodeficiency and defective processing of V(D)J recombination intermediates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

The helix-hairpin-helix DNA-binding motif: a structural basis for non-sequence-specific recognition of DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Mutational analysis of mammalian poly(A) polymerase identifies a region for primer binding and catalytic domain, homologous to the family X polymerases, and to other nucleotidyltransferases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Mice lacking TdT: mature animals with an immature lymphocyte repertoire

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Lack of N regions in antigen receptor variable region genes of TdT-deficient lymphocytes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

The two isoforms of mouse terminal deoxynucleotidyl transferase differ in both the ability to add N regions and subcellular localization.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

A rapid test for V(D)J recombinase activity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Multiple roles of divalent cation in the terminal deoxynucleotidyltransferase reaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

An attempt to unify the structure of polymerases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Compilation and alignment of DNA polymerase sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

The Crystal Structures of Metal Complexes of Nucleic Acids and Their Constituent

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

CCA-adding enzymes and poly(A) polymerases are all members of the same nucleotidyltransferase superfamily: characterization of the CCA-adding enzyme from the archaeal hyperthermophile Sulfolobus shibatae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=125842

Terminal deoxynucleotidyl transferase indiscriminately incorporates ribonucleotides and deoxyribonucleotides

2 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

DNA polymerase beta belongs to an ancient nucleotidyltransferase superfamily

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

PROCHECK: a program to check the stereochemical quality of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

Isomorphous replacement: effects of errors on the phase probability distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

Catalytic Center of DNA Polymerase β for Excision of Deoxyribose Phosphate Groups†

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

High-level expression of murine terminal deoxynucleotidyl transferase inEscherichia coli grown at low temperature and overexpressingargU tRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

Comparison of the Two Murine Deoxynucleotidyltransferase Terminal Isoforms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FEMBOJ%2F21.3.427

Crystallization of the catalytic domain of murine terminal deoxynucleotidyl transferase

21 January 2018

1 reference

12 December 2020

Oligodeoxyribonucleotide primers for calf thymus polymerase

1 reference

12 December 2020

[33] AMoRe: An automated molecular replacement program package

1 reference

12 December 2020

Enzymic synthesis of polynucleotides. Oligodeoxynucleotides with one 3'-terminal ribonucleotide as primers for polydeoxynucleotide synthesis

1 reference

12 December 2020

Deoxynucleotide-polymerizing enzymes of calf thymus gland. II. Properties of the terminal deoxynucleotidyltransferase

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12 December 2020

Biochemical properties of purified human terminal deoxynucleotidyltransferase

1 reference

12 December 2020

Stereoisomers of deoxynucleoside 5'-triphosphates as substrates for template-dependent and -independent DNA polymerases

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12 December 2020

Structural insights into DNA polymerase beta fidelity: hold tight if you want it right

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12 December 2020

Identifiers

DOI

10.1093/EMBOJ/21.3.427

1 reference

release_g525ny27tnddzpuz3yc27r2f64

Fatcat ID

0 references

1 reference

1 reference

PubMed publication ID

11823435

1 reference