Solution structure of the ActD-5'-CCGTT3GTGG-3' complex: drug interaction with tandem G.T mismatches and hairpin loop backbone (Q27641177)

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3 November 2019

title

Solution structure of the ActD-5'-CCGTT3GTGG-3' complex: drug interaction with tandem G.T mismatches and hairpin loop backbone (English)

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3 November 2019

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3

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3 November 2019

author name string

Ko-Hsin Chin

series ordinal

1

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3 November 2019

Fu-Ming Chen

series ordinal

2

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3 November 2019

language of work or name

English

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publication date

1 May 2003

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3 November 2019

published in

Nucleic Acids Research

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3 November 2019

volume

31

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3 November 2019

issue

10

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3 November 2019

page(s)

2622-2629

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Crystal structure of actinomycin D bound to the CTG triplet repeat sequences linked to neurological diseases

3 November 2019

cites work

1 reference

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Looped out and perpendicular: deformation of Watson-Crick base pair associated with actinomycin D binding.

20 March 2017

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Crystallographic analysis of a novel complex of actinomycin D bound to the DNA decamer CGATCGATCG

20 March 2017

1 reference

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Hairpin loops consisting of single adenine residues closed by sheared A.A and G.G pairs formed by the DNA triplets AAA and GAG: solution structure of the d(GTACAAAGTAC) hairpin

20 March 2017

1 reference

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DNA bending and unwinding associated with actinomycin D antibiotics bound to partially overlapping sites on DNA

20 March 2017

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DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G.A pairs in solution

20 March 2017

1 reference

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G . T base-pairs in a DNA helix: the crystal structure of d(G-G-G-G-T-C-C-C)

20 March 2017

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Solution structure of actinomycin-DNA complexes: Drug intercalation at isolated G-C sites

20 March 2017

1 reference

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Binding of actinomycin D to single-stranded DNA of sequence motifs d(TGTCT(n)G) and d(TGT(n)GTCT).

20 March 2017

1 reference

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Actinomycin D binds strongly to d(TGTCATTG), a single-stranded DNA devoid of GpC sites

29 September 2017

1 reference

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The role of the loop in binding of an actinomycin D analog to hairpins formed by single-stranded DNA.

29 September 2017

1 reference

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Actinomycin D binds strongly to d(CGACGACG) and d(CGTCGTCG).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Binding of actinomycin D to DNA oligomers of CXG trinucleotide repeats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Actinomycin D binds strongly and dissociates slowly at the dGpdC site with flanking T/T mismatches

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Actinomycin D binding to single-stranded DNA: sequence specificity and hemi-intercalation model from fluorescence and 1H NMR spectroscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Formation of multiple complexes between actinomycin D and a DNA hairpin: structural characterization by multinuclear NMR.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Binding of actinomycin D to the T(G)nT motif of double-stranded DNA: determination of the guanine requirement in nonclassical, non-GpC binding sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

DNA Modification and Cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

1H and 31P NMR investigations of actinomycin D binding selectivity with oligodeoxyribonucleotides containing multiple adjacent d(GC) sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

2D NMR investigation of the binding of the anticancer drug actinomycin D to duplexed dATGCGCAT: conformational features of the unique 2:1 adduct

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Binding of actinomycin D to DNA: evidence for a nonclassical high-affinity binding mode that does not require GpC sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Binding specificities of actinomycin D to non-self-complementary -XGCY- tetranucleotide sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Sequence-specific actinomycin D binding to single-stranded DNA inhibits HIV reverse transcriptase and other polymerases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Determination of the preferred conformations constrained along the C-4'-C-5' and C-5'-0-5' bonds of .beta.-5'-nucleotides in solution. Four-bond phosphorus-31-proton coupling

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Quadruple intercalated G-6 stack: a possible motif in the fold-back structure of the Drosophila centromeric dodeca-satellite?

2 June 2018

1 reference

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Enhanced loop DNA folding induced by thymine-CH3 group contact and perpendicular guanine-thymine interaction

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=156035

Natural abundance heteronuclear NMR studies of the T3 mini-loop hairpin in the terminal repeat of the adenoassociated virus 2.

27 November 2018

1 reference

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Stable formation of a pyrimidine-rich loop hairpin in a cruciform promoter

27 November 2018

1 reference

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Conformational analysis of the sugar ring in nucleosides and nucleotides. New description using the concept of pseudorotation

27 November 2018

1 reference

12 December 2020

Assignment of the 31P and 1H resonances in oligonucleotides by two-dimensional NMR spectroscopy

1 reference

12 December 2020

Wobble dG X dT pairing in right-handed DNA: solution conformation of the d(C-G-T-G-A-A-T-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra

1 reference

12 December 2020

Crystal structure of the 2:1 complex between d(GAAGCTTC) and the anticancer drug actinomycin D

1 reference

12 December 2020

Actinomycin D binds to metastable hairpins in single-stranded DNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG353

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12736312%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

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3 November 2019

PubMed publication ID

12736312

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