Structural study of DNA duplex containing an N-(2-deoxy- -D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics (Q27642304)

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English	Structural study of DNA duplex containing an N-(2-deoxy- -D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics	scientific article

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530441%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

Structural study of DNA duplex containing an N-(2-deoxy-beta-D-erythro-pentofuranosyl) formamide frameshift by NMR and restrained molecular dynamics (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530441%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

molecular dynamics simulation

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3

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19 December 2019

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C Maufrais

1

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19 December 2019

G V Fazakerley

2

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19 December 2019

Y Boulard

4

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19 December 2019

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1 October 2003

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19 December 2019

Nucleic Acids Research

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19 December 2019

31

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19 December 2019

20

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19 December 2019

5930-5940

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19 December 2019

Solution structure of a non-palindromic 16 base-pair DNA related to the HIV-1 kappa B site: evidence for BI-BII equilibrium inducing a global dynamic curvature of the duplex

1 reference

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20 March 2017

Solution structure of [d(ATGAGCGAATA)]2. Adjacent G:A mismatches stabilized by cross-strand base-stacking and BII phosphate groups

1 reference

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20 March 2017

MOLMOL: a program for display and analysis of macromolecular structures

1 reference

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20 March 2017

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

1 reference

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20 March 2017

Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering

1 reference

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7 April 2017

Defining the structure of irregular nucleic acids: conventions and principles

1 reference

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7 April 2017

Solution structure by NMR and molecular dynamics of a duplex containing a guanine opposite a N-(2-deoxy-beta-D-erythro-pentofuranosyl)formamide lesion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Solution structures of a duplex containing an adenine opposite a gap (absence of one nucleotide). An NMR study and molecular dynamic simulations with explicit water molecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Solution structure of duplex DNA containing an extrahelical abasic site analog determined by NMR spectroscopy and molecular dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Molecular dynamics simulations of d(C-G-C-G-A) X d(T-C-G-C-G) with and without "hydrated" counterions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Extra thymidine stacks into the d(CTGGTGCGG).d(CCGCCCAG) duplex. An NMR and modelbuilding study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Molecular mechanics and dynamics of an abasic frameshift in DNA and comparison to NMR data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Incorporation by chemical synthesis and characterization of deoxyribosylformylamine into DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

DNA structure from A to Z.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

29 September 2017

Extrahelical adenosine stacks into right-handed DNA: solution conformation of the d(C-G-C-A-G-A-G-C-T-C-G-C-G) duplex deduced from distance geometry analysis of nuclear Overhauser effect spectra.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

2 June 2018

Two-dimensional 1H and 31P NMR spectra and restrained molecular dynamics structure of an extrahelical adenosine tridecamer oligodeoxyribonucleotide duplex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

2 June 2018

Abasic frameshift in DNA. Solution conformation determined by proton NMR and molecular mechanics calculations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

2 June 2018

Deoxyribose conformation in [d(GTATATAC)]2: evaluation of sugar pucker by simulation of double-quantum-filtered COSY cross-peaks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

2 June 2018

Three-dimensional structures of bulge-containing DNA fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

2 June 2018

Solution Structure ofN-(2-Deoxy-d-erythro-pentofuranosyl)urea Frameshifts, One Intrahelical and the Other Extrahelical, by Nuclear Magnetic Resonance and Molecular Dynamics†

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

27 November 2018

Conformation of a bulge-containing oligomer from a hot-spot sequence by NMR and energy minimization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=219481

27 November 2018

Extra adenosine stacks into the self-complementary d(CGCAGAATTCGCG) duplex in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational perturbation due to an extra adenosine in a self-complementary oligodeoxynucleotide duplex

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural model for an oligonucleotide containing a bulged guanosine by NMR and energy minimization

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformation of adenosine bulge-containing deoxytridecanucleotide duplexes in solution. Extra adenosine stacks into duplex independent of flanking sequence and temperature

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational transitions in cytidine bulge-containing deoxytridecanucleotide duplexes: extra cytidine equilibrates between looped out (low temperature) and stacked (elevated temperature) conformations in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational transitions in thymidine bulge-containing deoxytridecanucleotide duplexes. Role of flanking sequence and temperature in modulating the equilibrium between looped out and stacked thymidine bulge states

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR studies of a deoxyribodecanucleotide containing an extrahelical thymidine surrounded by an oligo(dA).oligo(dT) tract

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR studies of an extrahelical cytosine in an A.T rich region of a deoxyribodecanucleotide

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two- and three-dimensional 31P-driven NMR procedures for complete assignment of backbone resonances in oligodeoxyribonucleotides

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of the backbone torsion angle epsilon in nucleic acids

1 reference

https://pubmed.ncbi.nlm.nih.gov/14530441

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKG803

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530441%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530441%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14530441%20AND%20SRC:MED&resulttype=core&format=json

19 December 2019

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