Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein (Q27646497)

4

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Gabriele Varani

7

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author name string

Amy Davidson

1

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Thomas C Leeper

2

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Jonathan Karn

5

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John A Robinson

Proceedings of the National Academy of Sciences of the United States of America

6

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language of work or name

English

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publication date

21 July 2009

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published in

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volume

106

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issue

29

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page(s)

11931-6

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cites work

Structure-guided peptidomimetic design leads to nanomolar beta-hairpin inhibitors of the Tat-TAR interaction of bovine immunodeficiency virus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Rational design of inhibitors of HIV-1 TAR RNA through the stabilisation of electrostatic "hot spots"

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Solution structure of the HIV-2 TAR-argininamide complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Molecular recognition in the bovine immunodeficiency virus Tat peptide-TAR RNA complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

The Xplor-NIH NMR molecular structure determination package

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Protein backbone angle restraints from searching a database for chemical shift and sequence homology

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Controlling the elongation phase of transcription with P-TEFb

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

The regulation of HIV-1 transcription: molecular targets for chemotherapeutic intervention

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

An inhibitor of the Tat/TAR RNA interaction that effectively suppresses HIV-1 replication

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Reaching for high-hanging fruit in drug discovery at protein-protein interfaces

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Recent status of HIV-1 gene expression inhibitors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Structural mimicry of retroviral tat proteins by constrained beta-hairpin peptidomimetics: ligands with high affinity and selectivity for viral TAR RNA regulatory elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Targeting RNA with small-molecule drugs: therapeutic promise and chemical challenges

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

TAR-RNA recognition by a novel cyclic aminoglycoside analogue.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Arginine-mediated RNA recognition: the arginine fork.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

Controlling human immunodeficiency virus type 1 gene expression by unnatural peptides

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0900629106

Structure-based drug design targeting an inactive RNA conformation: exploiting the flexibility of HIV-1 TAR RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0900629106

Dissection of the proposed base triple in human immunodeficiency virus TAR RNA indicates the importance of the Hoogsteen interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0900629106

Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0900629106

High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0900629106

New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0900629106

An NMR study of the HIV-1 TAR element hairpin

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2715490

TAR RNA recognition by a cyclic peptidomimetic of Tat protein

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19584251

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19584251

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0900629106

1 reference

ADS bibcode

2009PNAS..10611931D

0 references

1 reference

1 reference

PubMed publication ID

19584251

1 reference