Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein (Q27658119)

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12 February 2020

title

Structural basis for specific recognition of multiple mRNA targets by a PUF regulatory protein (English)

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12 February 2020

4

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12 February 2020

author name string

Yeming Wang

series ordinal

1

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12 February 2020

Laura Opperman

series ordinal

2

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12 February 2020

Marvin Wickens

series ordinal

3

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12 February 2020

language of work or name

English

0 references

publication date

9 November 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19901328%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

12 February 2020

published in

1 reference

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12 February 2020

volume

106

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12 February 2020

issue

48

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12 February 2020

page(s)

20186-20191

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Structures of human Pumilio with noncognate RNAs reveal molecular mechanisms for binding promiscuity

12 February 2020

cites work

1 reference

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Basis of altered RNA-binding specificity by PUF proteins revealed by crystal structures of yeast Puf4p

20 March 2017

1 reference

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RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution)

20 March 2017

1 reference

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MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

20 March 2017

1 reference

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Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Modular recognition of RNA by a human pumilio-homology domain

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Crystal structure of a Pumilio homology domain

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Structure of Pumilio reveals similarity between RNA and peptide binding motifs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

PUM2, a novel murine puf protein, and its consensus RNA-binding site

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

A PUF family portrait: 3'UTR regulation as a way of life

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

A single C. elegans PUF protein binds RNA in multiple modes

24 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

FBF and its dual control of gld-1 expression in the Caenorhabditis elegans germline

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

A 3'UTR pumilio-binding element directs translational activation in olfactory sensory neurons

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

A Caenorhabditis elegans PUF protein family with distinct RNA binding specificity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Conserved regulation of MAP kinase expression by PUF RNA-binding proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Controls of germline stem cells, entry into meiosis, and the sperm/oocyte decision in Caenorhabditis elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Engineering RNA sequence specificity of Pumilio repeats.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

LIP-1 phosphatase controls the extent of germline proliferation in Caenorhabditis elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Dose-dependent control of proliferation and sperm specification by FOG-1/CPEB

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

RNA-protein interactions in the yeast three-hybrid system: affinity, sensitivity, and enhanced library screening

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

GLD-3 and control of the mitosis/meiosis decision in the germline of Caenorhabditis elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Regulation of the mitosis/meiosis decision in theCaenorhabditis elegansgermline

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

A conserved RNA-binding protein controls germline stem cells in Caenorhabditis elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

CPEB proteins control two key steps in spermatogenesis in C. elegans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Recruitment of Nanos to hunchback mRNA by Pumilio

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Imaging dynamics of endogenous mitochondrial RNA in single living cells.

29 September 2017

1 reference

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The Drosophila pumilio gene: an unusually long transcription unit and an unusual protein

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

Pumilio is essential for function but not for distribution of the Drosophila abdominal determinant Nanos.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

mRNA regulation by Puf domain proteins.

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

Analysis of the C. elegans germline stem cell region

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

NANOS-3 and FBF proteins physically interact to control the sperm-oocyte switch in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

PUF protein-mediated deadenylation is catalyzed by Ccr4p.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

Dkk2 has a role in terminal osteoblast differentiation and mineralized matrix formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

FBF-1 and FBF-2 regulate the size of the mitotic region in the C. elegans germline

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

Biochemical identification of Xenopus Pumilio as a sequence-specific cyclin B1 mRNA-binding protein that physically interacts with a Nanos homolog, Xcat-2, and a cytoplasmic polyadenylation element-binding protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

GLD-3, a bicaudal-C homolog that inhibits FBF to control germline sex determination in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0812076106

A single spacer nucleotide determines the specificities of two mRNA regulatory proteins.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2787170

NMR structure of the bacteriophage lambda N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19901328

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0812076106

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19901328%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

ADS bibcode

2009PNAS..10620186W

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19901328%20AND%20SRC:MED&resulttype=core&format=json

12 February 2020

2 references