High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA (Q27658135)

5

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Senada Nozinovic

1

object named as

Senada Nozinovic

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author name string

Hendrik R A Jonker

3

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Christian Richter

Structure and stability of wild-type and mutant RNA internal loops from the SL-1 domain of the HIV-1 packaging signal

4

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language of work or name

English

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publication date

January 2010

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published in

Nucleic Acids Research

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volume

38

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issue

2

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page(s)

683-94

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cites work

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Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions

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Assignment and NOE analysis of 2'-hydroxyl protons in RNA: implications for stabilization of RNA A-form duplexes

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Unrestrained stochastic dynamics simulations of the UUCG tetraloop using an implicit solvation model

29 September 2017

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Structural origins of gentamicin antibiotic action

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Determination of three-bond 1H3'-31P couplings in nucleic acids and protein-nucleic acid complexes by quantitative J correlation spectroscopy.

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CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

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Studies on the structure and stabilizing factor of the CUUCGG hairpin RNA using chemically synthesized oligonucleotides

29 September 2017

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29 September 2017

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NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops.

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Determination of the glycosidic bond angle chi in RNA from cross-correlated relaxation of CH dipolar coupling and N chemical shift anisotropy.

2 June 2018

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Residue specific ribose and nucleobase dynamics of the cUUCGg RNA tetraloop motif by MNMR 13C relaxation.

21 January 2018

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A suite of 2H NMR spin relaxation experiments for the measurement of RNA dynamics

21 January 2018

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Quantitative gamma-HCNCH: determination of the glycosidic torsion angle chi in RNA oligonucleotides from the analysis of CH dipolar cross-correlated relaxation by solution NMR spectroscopy.

21 January 2018

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RNA phosphodiester backbone dynamics of a perdeuterated cUUCGg tetraloop RNA from phosphorus-31 NMR relaxation analysis

21 January 2018

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Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors.

21 January 2018

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A novel PH-cT-COSY methodology for measuring JPH coupling constants in unlabeled nucleic acids. application to HIV-2 TAR RNA.

21 January 2018

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Measurement of 2J(H,C)- and 3J(H,C)-coupling constants by alpha/beta selective HC(C)H-TOCSY.

21 January 2018

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The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

21 January 2018

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Quantitative 2D and 3D Γ-HCP Experiments for the Determination of the Angles α and ζ in the Phosphodiester Backbone of Oligonucleotides

21 January 2018

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Determination of sugar conformation in large RNA oligonucleotides from analysis of dipole-dipole cross correlated relaxation by solution NMR spectroscopy

27 November 2018

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Determination of 3J(H3í, Pi+1) and 3J(H5í/5i, Pi) coupling constants in 13C-labeled nucleic acids using constant-time HMQC

27 November 2018

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12 December 2020

Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop

1 reference

12 December 2020

New NMR experiments for RNA nucleobase resonance assignment and chemical shift analysis of an RNA UUCG tetraloop

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12 December 2020

2'-hydroxyl proton positions in helical RNA from simultaneously measured heteronuclear scalar couplings and NOEs

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12 December 2020

13C-detected NMR experiments for measuring chemical shifts and coupling constants in nucleic acid bases

1 reference

12 December 2020

A New Experiment for the Measurement of nJ(C,P) Coupling Constants Including 3J(C4'i,Pi) and 3J(C4'i,Pi+1) in Oligonucleotides

1 reference

12 December 2020

Improved measurement of 13C, 31P J coupling constants in isotopically labeled RNA

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12 December 2020

Determination of a complete set of coupling constants in 13C-labeled oligonucleotides

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12 December 2020

Theoretical studies of an exceptionally stable RNA tetraloop: observation of convergence from an incorrect NMR structure to the correct one using unrestrained molecular dynamics

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKP956

1 reference

1832834

1832834

1 reference

1 reference

1 reference