Structural basis for the photoconversion of a phytochrome to the activated Pfr form (Q27658962)

2

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John Markley

6

object named as

John L Markley

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author name string

Andrew T Ulijasz

1

0 references

Junrui Zhang

4

0 references

Mario Rivera

5

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Richard D Vierstra

Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome

7

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language of work or name

English

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publication date

14 January 2010

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published in

Nature

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volume

463

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issue

7278

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page(s)

250-4

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cites work

1 reference

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Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction

20 March 2017

1 reference

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The structure of a complete phytochrome sensory module in the Pr ground state

20 March 2017

1 reference

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Solution Structure of a Cyanobacterial Phytochrome GAF Domain in the Red-Light-Absorbing Ground State

20 March 2017

1 reference

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Crystal structure of the chromophore binding domain of an unusual bacteriophytochrome, RpBphP3, reveals residues that modulate photoconversion

20 March 2017

1 reference

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High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution

20 March 2017

1 reference

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Multiple sequence alignment with the Clustal series of programs

20 March 2017

1 reference

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PRODRG: a tool for high-throughput crystallography of protein-ligand complexes

20 March 2017

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The Xplor-NIH NMR molecular structure determination package

20 March 2017

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Protein backbone angle restraints from searching a database for chemical shift and sequence homology

20 March 2017

1 reference

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Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

20 March 2017

1 reference

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Light-induced chromophore activity and signal transduction in phytochromes observed by 13C and 15N magic-angle spinning NMR.

20 March 2017

1 reference

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Mutant screen distinguishes between residues necessary for light-signal perception and signal transfer by phytochrome B.

29 September 2017

1 reference

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Characterization of two thermostable cyanobacterial phytochromes reveals global movements in the chromophore-binding domain during photoconversion

29 September 2017

1 reference

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Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes

29 September 2017

1 reference

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Probing protein-chromophore interactions in Cph1 phytochrome by mutagenesis

29 September 2017

1 reference

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Phytochrome structure and signaling mechanisms.

29 September 2017

1 reference

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Chromophore structure of the physiologically active form (P(fr)) of phytochrome

29 September 2017

1 reference

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Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes

29 September 2017

1 reference

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Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors

29 September 2017

1 reference

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Predicting the signaling state of photoactive yellow protein

29 September 2017

1 reference

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Phytochrome photosensory signalling networks

29 September 2017

1 reference

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Bicelle-based liquid crystals for NMR-measurement of dipolar couplings at acidic and basic pH values

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Chromophore structure in the photocycle of the cyanobacterial phytochrome Cph1.

29 September 2017

1 reference

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Resonance Raman analysis of the Pr and Pfr forms of phytochrome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Locked 5Zs-biliverdin blocks the Meta-RA to Meta-RC transition in the functional cycle of bacteriophytochrome Agp1.

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE08671

A common sense approach to peak picking in two-, three-, and four-dimensional spectra using automatic computer analysis of contour diagrams. 1991.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Assembly of Agrobacterium phytochromes Agp1 and Agp2 with doubly locked bilin chromophores

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Highly conserved residues Asp-197 and His-250 in Agp1 phytochrome control the proton affinity of the chromophore and Pfr formation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Assembly of synthetic locked chromophores with agrobacterium phytochromes Agp1 and Agp2.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Light-induced proton release of phytochrome is coupled to the transient deprotonation of the tetrapyrrole chromophore

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Sterically locked synthetic bilin derivatives and phytochrome Agp1 from Agrobacterium tumefaciens form photoinsensitive Pr- and Pfr-like adducts.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Evaluation of backbone proton positions and dynamics in a small protein by liquid crystal NMR spectroscopy

27 November 2018

1 reference

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Structural basis of a phototropin light switch.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2807988

Light-induced proton release and proton uptake reactions in the cyanobacterial phytochrome Cph1

27 November 2018

1 reference

12 December 2020

Protonation State and Structural Changes of the Tetrapyrrole Chromophore during the Pr→ PfrPhototransformation of Phytochrome: A Resonance Raman Spectroscopic Study†

1 reference

12 December 2020

Measurement of dipolar couplings for methylene and methyl sites in weakly oriented macromolecules and their use in structure determination

1 reference

12 December 2020

Phycobiliprotein-bilin linkage diversity. I. Structural studies on A- and D-ring-linked phycocyanobilins

1 reference

12 December 2020

Heteronuclear solution-state NMR studies of the chromophore in cyanobacterial phytochrome Cph1

1 reference

12 December 2020

Measurement of Proton, Nitrogen, and Carbonyl Chemical Shielding Anisotropies in a Protein Dissolved in a Dilute Liquid Crystalline Phase

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE08671

7 January 2021

inferred from DOI database lookup

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE08671

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NATURE08671

1 reference

Dimensions Publication ID

2183731

1015215827

0 references

2183731

1 reference

1 reference

1 reference