Probing the Interaction of Archaeal DNA Polymerases with Deaminated Bases Using X-ray Crystallography and Non-Hydrogen Bonding Isosteric Base Analogues (Q27662120)

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English	Probing the Interaction of Archaeal DNA Polymerases with Deaminated Bases Using X-ray Crystallography and Non-Hydrogen Bonding Isosteric Base Analogues	scientific article

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scholarly article

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Probing the Interaction of Archaeal DNA Polymerases with Deaminated Bases Using X-ray Crystallography and Non-Hydrogen Bonding Isosteric Base Analogues (English)

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X-ray crystallography

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6

object named as

Eric T Kool

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author name string

Tom Killelea

1

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Samantak Ghosh

2

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Samuel S Tan

3

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Pauline Heslop

4

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Susan J Firbank

5

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Bernard A Connolly

7

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language of work or name

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publication date

13 July 2010

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49

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27

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5772-81

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Uracil recognition in archaeal DNA polymerases captured by X-ray crystallography

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20 March 2017

Crystal structure of Pfu, the high fidelity DNA polymerase from Pyrococcus furiosus

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20 March 2017

Structure and activity of Y-class DNA polymerase DPO4 from Sulfolobus solfataricus with templates containing the hydrophobic thymine analog 2,4-difluorotoluene

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20 March 2017

Structure of the replicating complex of a pol alpha family DNA polymerase

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20 March 2017

Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1

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20 March 2017

Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex

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20 March 2017

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29 September 2017

Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius

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Coot: model-building tools for molecular graphics

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Refinement of macromolecular structures by the maximum-likelihood method

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20 March 2017

The CCP4 suite: programs for protein crystallography

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Use of non-crystallographic symmetry in protein structure refinement

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Effects of hydrogen bonding within a damaged base pair on the activity of wild type and DNA-intercalating mutants of human alkyladenine DNA glycosylase

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Structure and function in the uracil-DNA glycosylase superfamily

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Structural and biochemical investigation of the role in proofreading of a beta hairpin loop found in the exonuclease domain of a replicative DNA polymerase of the B family

1 reference

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Structural basis for the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I: a two metal ion mechanism

1 reference

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7 April 2017

The 3'-5' proofreading exonuclease of archaeal family-B DNA polymerase hinders the copying of template strand deaminated bases

1 reference

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Uracil recognition by replicative DNA polymerases is limited to the archaea, not occurring with bacteria and eukarya

1 reference

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29 September 2017

Model systems for understanding DNA base pairing

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29 September 2017

The difluorotoluene debate--a decade later

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29 September 2017

Probing the active site tightness of DNA polymerase in subangstrom increments

1 reference

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Evidence for a Watson-Crick hydrogen bonding requirement in DNA synthesis by human DNA polymerase kappa

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Recognition of the pro-mutagenic base uracil by family B DNA polymerases from archaea

1 reference

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Replacing the nucleobases in DNA with designer molecules

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Hydrogen bonding, base stacking, and steric effects in dna replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2901926

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Improving dideoxynucleotide-triphosphate utilisation by the hyper-thermophilic DNA polymerase from the archaeon Pyrococcus furiosus

1 reference

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A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil.

1 reference

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Aromatic Nonpolar Nucleosides as Hydrophobic Isosteres of Pyrimidines and Purine Nucleosides

1 reference

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DNA polymerase catalysis in the absence of Watson-Crick hydrogen bonds: analysis by single-turnover kinetics

1 reference

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1 reference

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Probing the requirements for recognition and catalysis in Fpg and MutY with nonpolar adenine isosteres

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Structural basis for uracil recognition by archaeal family B DNA polymerases

1 reference

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27 November 2018

Mimicking the Structure and Function of DNA: Insights into DNA Stability and Replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/20527806

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fluorinated DNA bases as probes of electrostatic effects in DNA base stacking

1 reference

https://pubmed.ncbi.nlm.nih.gov/20527806

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Importance of terminal base pair hydrogen-bonding in 3'-end proofreading by the Klenow fragment of DNA polymerase I

1 reference

https://pubmed.ncbi.nlm.nih.gov/20527806

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction of the family-B DNA polymerase from the archaeon Pyrococcus furiosus with deaminated bases

1 reference

https://pubmed.ncbi.nlm.nih.gov/20527806

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of the nonpolar base 4-methylindole in DNA by the DNA repair adenine glycosylase MutY

1 reference

https://pubmed.ncbi.nlm.nih.gov/20527806

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI100421R

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Consolidated OpenCitations Corpus – April 2017

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

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Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

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Consolidated OpenCitations Corpus – April 2017

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