Insights regarding guanine nucleotide exchange from the structure of a DENN-domain protein complexed with its Rab GTPase substrate (Q27675441)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22065758%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

title

Insights regarding guanine nucleotide exchange from the structure of a DENN-domain protein complexed with its Rab GTPase substrate (English)

1 reference

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16 January 2020

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6

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16 January 2020

author name string

Xudong Wu

1

1 reference

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16 January 2020

Michael J Bradley

2

1 reference

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16 January 2020

Yiying Cai

3

1 reference

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16 January 2020

Daniel Kümmel

4

1 reference

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16 January 2020

Enrique M De La Cruz

5

1 reference

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16 January 2020

Karin M Reinisch

7

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16 January 2020

language of work or name

English

0 references

publication date

7 November 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22065758%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

16 January 2020

published in

1 reference

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16 January 2020

volume

108

1 reference

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16 January 2020

issue

46

1 reference

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16 January 2020

page(s)

18672-18677

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Family-wide characterization of the DENN domain Rab GDP-GTP exchange factors

16 January 2020

cites work

1 reference

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RabGDI displacement by DrrA from Legionella is a consequence of its guanine nucleotide exchange activity

20 March 2017

1 reference

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The Structural Basis for Activation of the Rab Ypt1p by the TRAPP Membrane-Tethering Complexes

20 March 2017

1 reference

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20 March 2017

A short history of SHELX

1 reference

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Crystal structure of the Sec4p⋅Sec2p complex in the nucleotide exchanging intermediate state

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Structural basis for Rab GTPase activation by VPS9 domain exchange factors

20 March 2017

1 reference

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A Catalytic Coiled Coil: Structural Insights into the Activation of the Rab GTPase Sec4p by Sec2p

20 March 2017

1 reference

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The architecture of the multisubunit TRAPP I complex suggests a model for vesicle tethering

20 March 2017

1 reference

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Structural basis of family-wide Rab GTPase recognition by rabenosyn-5

20 March 2017

1 reference

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Coot: model-building tools for molecular graphics

20 March 2017

1 reference

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Refinement of macromolecular structures by the maximum-likelihood method

20 March 2017

1 reference

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Rab proteins as membrane organizers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

20 March 2017

2 references

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20 March 2017

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Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

29 September 2017

1 reference

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Preparation of selenomethionyl proteins for phase determination

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

The Connecdenn DENN domain: a GEF for Rab35 mediating cargo-specific exit from early endosomes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

DENN domain proteins: regulators of Rab GTPases

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

GTPases involved in vesicular trafficking: Structures and mechanisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

The connecdenn family, Rab35 guanine nucleotide exchange factors interfacing with the clathrin machinery.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Structural mechanisms for regulation of membrane traffic by rab GTPases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Kinetic analysis of the guanine nucleotide exchange activity of TRAPP, a multimeric Ypt1p exchange factor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Coats, tethers, Rabs, and SNAREs work together to mediate the intracellular destination of a transport vesicle

29 September 2017

1 reference

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Organelle identity and the signposts for membrane traffic

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Targeting Rab GTPases to distinct membrane compartments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Human RAS superfamily proteins and related GTPases

29 September 2017

1 reference

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Exchange factors, effectors, GAPs and motor proteins: common thermodynamic and kinetic principles for different functions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

Longin-like folds identified in CHiPS and DUF254 proteins: vesicle trafficking complexes conserved in eukaryotic evolution

29 September 2017

1 reference

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Vps9, Rabex-5 and DSS4: proteins with weak but distinct nucleotide-exchange activities for Rab proteins

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110415108

uDENN, DENN, and dDENN: indissociable domains in Rab and MAP kinases signaling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110415108

TRAPP stimulates guanine nucleotide exchange on Ypt1p

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110415108

Processing of X-ray diffraction data collected in oscillation mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110415108

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110415108

Model building and refinement practice

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3219131

The Legionella pneumophila effector protein DrrA is a Rab1 guanine nucleotide-exchange factor

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22065758

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sec2 is a Highly Efficient Exchange Factor for the Rab Protein Sec4

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22065758

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1110415108

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22065758%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

ADS bibcode

2011PNAS..10818672W

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22065758%20AND%20SRC:MED&resulttype=core&format=json

16 January 2020

PubMed publication ID

22065758

2 references