Mobility of Xe Atoms within the Oxygen Diffusion Channel of Cytochrome ba 3 Oxidase (Q27679172)

1

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James A Fee

2

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Ashok A Deniz

3

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C David Stout

Tunnels modulate ligand flux in a heme nitric oxide/oxygen binding (H-NOX) domain

4

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language of work or name

English

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publication date

12 June 2012

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published in

Biochemistry

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volume

51

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issue

23

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page(s)

4669-76

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cites work

1 reference

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High Resolution Structure of the ba3 Cytochrome c Oxidase from Thermus thermophilus in a Lipidic Environment

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Ligand migration and cavities within Scapharca Dimeric HbI: studies by time-resolved crystallo-graphy, Xe binding, and computational analysis

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Combined Microspectrophotometric and Crystallographic Examination of Chemically Reduced and X-ray Radiation-Reduced Forms of Cytochrome ba 3 Oxidase from Thermus thermophilus : Structure of the Reduced Form of the Enzyme †

20 March 2017

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The Apolar Channel in Cerebratulus lacteus Hemoglobin Is the Route for O2 Entry and Exit

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Crystallographic studies of Xe and Kr binding within the large internal cavity of cytochrome ba3 from Thermus thermophilus: structural analysis and role of oxygen transport channels in the heme-Cu oxidases

20 March 2017

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Xenon in and at the end of the tunnel of bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase

20 March 2017

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The X-ray crystal structures of wild-type and EQ(I-286) mutant cytochrome c oxidases from Rhodobacter sphaeroides

20 March 2017

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Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase

20 March 2017

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Structure and mechanism of the aberrant ba3-cytochrome c oxidase from Thermus thermophilus

20 March 2017

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Ligand binding and conformational motions in myoglobin

20 March 2017

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Exploring hydrophobic sites in proteins with xenon or krypton

20 March 2017

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Refinement of macromolecular structures by the maximum-likelihood method

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Modulating distal cavities in the α and β subunits of human HbA reveals the primary ligand migration pathway

20 March 2017

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CO impedes superfast O2 binding in ba3 cytochrome oxidase from Thermus thermophilus

29 September 2017

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The cytochrome ba3 oxygen reductase from Thermus thermophilus uses a single input channel for proton delivery to the active site and for proton pumping

29 September 2017

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Protein crystallography under xenon and nitrous oxide pressure: comparison with in vivo pharmacology studies and implications for the mechanism of inhaled anesthetic action.

29 September 2017

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Imaging the migration pathways for O2, CO, NO, and Xe inside myoglobin

29 September 2017

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Crystal structure of the archaeal ammonium transporter Amt-1 from Archaeoglobus fulgidus

29 September 2017

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Truncated hemoglobins: a new family of hemoglobins widely distributed in bacteria, unicellular eukaryotes, and plants

29 September 2017

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Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.

29 September 2017

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Properties of a copper-containing cytochrome ba3: a second terminal oxidase from the extreme thermophile Thermus thermophilus

29 September 2017

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Oxygen activation and the conservation of energy in cell respiration

29 September 2017

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Toward a chemical mechanism of proton pumping by the B-type cytochrome c oxidases: application of density functional theory to cytochrome ba3 of Thermus thermophilus

29 September 2017

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Cytochrome c oxidase: structure and spectroscopy

2 June 2018

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Pulse Radiolysis Studies of Temperature Dependent Electron Transfers among Redox Centers in ba(3)-Cytochrome c Oxidase from Thermus thermophilus: Comparison of A- and B-Type Enzymes

2 June 2018

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H-NOX domains display different tunnel systems for ligand migration

27 November 2018

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Time-dependent atomic coordinates for the dissociation of carbon monoxide from myoglobin.

27 November 2018

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A homologous expression system for obtaining engineered cytochrome ba3 from Thermus thermophilus HB8.

27 November 2018

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Using xenon as a probe for dioxygen-binding sites in copper amine oxidases.

27 November 2018

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Mapping protein matrix cavities in human cytoglobin through Xe atom binding

27 November 2018

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Observation of the equilibrium CuB-CO complex and functional implications of the transient heme a3 propionates in cytochrome ba3-CO from Thermus thermophilus. Fourier transform infrared (FTIR) and time-resolved step-scan FTIR studies.

27 November 2018

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Low-resolution detergent tracing in protein crystals using xenon or krypton to enhance X-ray contrast.

27 November 2018

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MAD phasing with krypton.

27 November 2018

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Cloning and expression in Escherichia coli of the cytochrome c552 gene from Thermus thermophilus HB8. Evidence for genetic linkage to an ATP-binding cassette protein and initial characterization of the cycA gene products

27 November 2018

1 reference

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Heme/Copper Terminal Oxidases

27 November 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/22607023

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Modelling and refining site-specific radiation damage in SAD/MAD phasing

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22607023

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22607023