The selective tRNA aminoacylation mechanism based on a single G•U pair (Q27684299)

7

0 references

Shigeyuki Yokoyama

object named as

Shigeyuki Yokoyama

9

0 references

Paul Schimmel

8

object named as

Paul Schimmel

0 references

author name string

Masahiro Naganuma

1

0 references

Yeeting Esther Chong

3

0 references

Min Guo

4

0 references

Xiang-Lei Yang

5

0 references

Howard Gamper

Crystallographic and mutational studies on the tRNA thiouridine synthetase TtuA

6

0 references

language of work or name

English

0 references

publication date

26 June 2014

0 references

published in

Nature

0 references

volume

510

0 references

issue

7506

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page(s)

507-11

0 references

cites work

1 reference

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Paradox of mistranslation of serine for alanine caused by AlaRS recognition dilemma

20 March 2017

1 reference

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The C-Ala Domain Brings Together Editing and Aminoacylation Functions on One tRNA

20 March 2017

1 reference

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The structure of alanyl-tRNA synthetase with editing domain

20 March 2017

1 reference

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Unique protein architecture of alanyl-tRNA synthetase for aminoacylation, editing, and dimerization

20 March 2017

1 reference

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Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality

20 March 2017

1 reference

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Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea

20 March 2017

1 reference

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ATP binding by glutamyl-tRNA synthetase is switched to the productive mode by tRNA binding

20 March 2017

1 reference

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A succession of substrate induced conformational changes ensures the amino acid specificity of Thermus thermophilus prolyl-tRNA synthetase: comparison with histidyl-tRNA synthetase

20 March 2017

1 reference

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The G x U wobble base pair. A fundamental building block of RNA structure crucial to RNA function in diverse biological systems

20 March 2017

1 reference

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Crystal structure of acceptor stem of tRNA(Ala) from Escherichia coli shows unique G.U wobble base pair at 1.16 A resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

20 March 2017

1 reference

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Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

The crystal structure of phenylalanyl-tRNA synthetase from thermus thermophilus complexed with cognate tRNAPhe

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser)

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Class II aminoacyl transfer RNA synthetases: crystal structure of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp)

20 March 2017

1 reference

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Features and development of Coot

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Phasercrystallographic software

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Version 1.2 of the Crystallography and NMR system

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Coot: model-building tools for molecular graphics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

The CCP4 suite: programs for protein crystallography

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

PHENIX: building new software for automated crystallographic structure determination

20 March 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

20 March 2017

https://api.crossref.org/works/10.1038%2FNATURE13440

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

22 April 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

20 March 2017

https://api.crossref.org/works/10.1038/NATURE13440

Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Crystallization and preliminary X-ray crystallographic study of alanyl-tRNA synthetase from the archaeon Archaeoglobus fulgidus

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Long-range intramolecular signaling in a tRNA synthetase complex revealed by pre-steady-state kinetics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Elucidation of tRNA-dependent editing by a class II tRNA synthetase and significance for cell viability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Efficient aminoacylation of the tRNA(Ala) acceptor stem: dependence on the 2:71 base pair

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Transfer RNA recognition by aminoacyl-tRNA synthetases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Correlation of deformability at a tRNA recognition site and aminoacylation specificity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Universal rules and idiosyncratic features in tRNA identity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Additive, cooperative and anti-cooperative effects between identity nucleotides of a tRNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Eleven down and nine to go.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Functional communication in the recognition of tRNA by Escherichia coli glutaminyl-tRNA synthetase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Structure of yeast phenylalanine tRNA at 3 Å resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Evidence that a major determinant for the identity of a transfer RNA is conserved in evolution

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Association of transfer RNA acceptor identity with a helical irregularity

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

X-ray crystallographic conformational study of 5'-O-[N-(L-alanyl)-sulfamoyl]adenosine, a substrate analogue for alanyl-tRNA synthetase

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Mutant aminoacyl-tRNA synthetase that compensates for a mutation in the major identity determinant of its tRNA.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Aminoacylation of RNA minihelices with alanine.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Overlapping nucleotide determinants for specific aminoacylation of RNA microhelices.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Allosteric interaction of nucleotides and tRNA(ala) with E. coli alanyl-tRNA synthetase.

19 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Distinct kinetic mechanisms of the two classes of Aminoacyl-tRNA synthetases.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

A substrate-assisted concerted mechanism for aminoacylation by a class II aminoacyl-tRNA synthetase

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Alanyl-tRNA synthetase crystal structure and design for acceptor-stem recognition

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Connecting anticodon recognition with the active site of Escherichia coli glutaminyl-tRNA synthetase.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

27 November 2018

The second genetic code

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4323281

The reliability of in vivo structure-function analysis of tRNA aminoacylation

27 November 2018

1 reference

12 December 2020

Functional contacts of a transfer RNA synthetase with 2′-hydroxyl groups in the RNA minor groove

1 reference

12 December 2020

A nucleotide that enhances the charging of RNA minihelix sequence variants with alanine

1 reference

12 December 2020

Specificity for aminoacylation of an RNA helix: an unpaired, exocyclic amino group in the minor groove

1 reference

12 December 2020

A single base pair affects binding and catalytic parameters in the molecular recognition of a transfer RNA

1 reference

12 December 2020

Processing of X-ray diffraction data collected in oscillation mode

1 reference

12 December 2020

A simple structural feature is a major determinant of the identity of a transfer RNA

1 reference

12 December 2020

Modular arrangement of functional domains along the sequence of an aminoacyl tRNA synthetase

1 reference

12 December 2020

Functional evidence for indirect recognition of G.U in tRNA(Ala) by alanyl-tRNA synthetase

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE13440

1 reference

Dimensions Publication ID

1032787145

0 references

1 reference

1 reference

PubMed publication ID

24919148

1 reference