Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation (Q27684832)

9

object named as

Patrick Cramer

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author name string

Agnieszka Tudek

1

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Odil Porrua

2

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Tomasz Kabzinski

3

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Michael Lidschreiber

4

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Karel Kubicek

5

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Andrea Fortova

6

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François Lacroute

7

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Richard Stefl

10

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Domenico Libri

Serine phosphorylation and proline isomerization in RNAP II CTD control recruitment of Nrd1

11

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publication date

7 August 2014

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published in

Molecular Cell

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volume

55

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issue

3

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page(s)

467-81

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cites work

1 reference

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Recognition of Transcription Termination Signal by the Nuclear Polyadenylated RNA-binding (NAB) 3 Protein

20 March 2017

1 reference

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Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain

20 March 2017

1 reference

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TRAMP complex enhances RNA degradation by the nuclear exosome component Rrp6

20 March 2017

1 reference

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Structure and in vivo requirement of the yeast Spt6 SH2 domain

20 March 2017

1 reference

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The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

20 March 2017

1 reference

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Snapshots of the RNA processing factor SCAF8 bound to different phosphorylated forms of the carboxyl-terminal domain of RNA polymerase II

20 March 2017

1 reference

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A new yeast poly(A) polymerase complex involved in RNA quality control

20 March 2017

1 reference

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AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR

20 March 2017

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NMRPipe: a multidimensional spectral processing system based on UNIX pipes

20 March 2017

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A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast

20 March 2017

1 reference

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Transcriptome-wide binding sites for components of the Saccharomyces cerevisiae non-poly(A) termination pathway: Nrd1, Nab3, and Sen1.

20 March 2017

1 reference

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The RNA helicase Mtr4p modulates polyadenylation in the TRAMP complex

20 March 2017

1 reference

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The nuclear RNA polymerase II surveillance system targets polymerase III transcripts

20 March 2017

1 reference

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Uniform transitions of the general RNA polymerase II transcription complex

20 March 2017

1 reference

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Dissecting mechanisms of nuclear mRNA surveillance in THO/sub2 complex mutants

20 March 2017

1 reference

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Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

20 March 2017

1 reference

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Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Identification of a regulated pathway for nuclear pre-mRNA turnover.

20 March 2017

1 reference

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Progression through the RNA polymerase II CTD cycle

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Bidirectional promoters generate pervasive transcription in yeast

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Dealing with pervasive transcription.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Transcriptome surveillance by selective termination of noncoding RNA synthesis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

The RNA polymerase II C-terminal domain-interacting domain of yeast Nrd1 contributes to the choice of termination pathway and couples to RNA processing by the nuclear exosome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

RNA quality control in the nucleus: the Angels' share of RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

RNA decay machines: the exosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

The CTD code of RNA polymerase II: a structural view

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Extensive degradation of RNA precursors by the exosome in wild-type cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Distinct roles of non-canonical poly(A) polymerases in RNA metabolism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Gene-specific RNA polymerase II phosphorylation and the CTD code

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

THO/Sub2p functions to coordinate 3'-end processing with gene-nuclear pore association.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Futile cycle of transcription initiation and termination modulates the response to nucleotide shortage in S. cerevisiae

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Regulation of a eukaryotic gene by GTP-dependent start site selection and transcription attenuation.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

New applications of 2D filtered/edited NOESY for assignment and structure elucidation of RNA and RNA-protein complexes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4186968

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25066235

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1H, 13C, and 15N resonance assignments for the CTD-interacting domain of Nrd1 bound to Ser5-phosphorylated CTD of RNA polymerase II

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25066235

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2014.05.031

1 reference

1 reference

1 reference

PubMed publication ID

25066235

1 reference