Structural code for DNA recognition revealed in crystal structures of papillomavirus E2-DNA targets (Q27766367)

2

0 references

F Frolow

3

0 references

R S Hegde

4

0 references

Z Shakked

Proceedings of the National Academy of Sciences of the United States of America

5

0 references

language of work or name

English

0 references

publication date

22 December 1998

0 references

published in

0 references

volume

95

0 references

issue

26

0 references

page(s)

15194-9

0 references

cites work

Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

The structure and hydration of the A-DNA fragment d(GGGTACCC) at room temperature and low temperature

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

SETOR: hardware-lighted three-dimensional solid model representations of macromolecules

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Improved methods for building protein models in electron density maps and the location of errors in these models

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

RASMOL: biomolecular graphics for all

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

DNA bending: the prevalence of kinkiness and the virtues of normality

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

DNA targets for certain bZIP proteins distinguished by an intrinsic bend

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

The effect of the base sequence on the fine structure of the DNA double helix

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

29 September 2017

Intrinsically bent DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Crystal structure of a MAT alpha 2 homeodomain-operator complex suggests a general model for homeodomain-DNA interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Determinants of repressor/operator recognition from the structure of the trp operator binding site.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

The intrinsic curvature of DNA in solution.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Specific recognition nucleotides and their DNA context determine the affinity of E2 protein for 17 binding sites in the BPV-1 genome

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

The DNA-binding domain of HPV-16 E2 protein interaction with the viral enhancer: protein-induced DNA bending and role of the nonconserved core sequence in binding site affinity

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Double helix conformation, groove dimensions and ligand binding potential of a G/C stretch in B-DNA

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=28019

Processing of X-ray diffraction data collected in oscillation mode

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

Molecular replacement: the revival of the molecular Fourier transform method.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

New parameters for the refinement of nucleic acid-containing structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

DNA structure from A to Z.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

Improved Fourier coefficients for maps using phases from partial structures with errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

A novel form of the DNA double helix imposed on the TATA-box by the TATA-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

B-DNA twisting correlates with base-pair morphology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

The structure of B-DNA in oriented fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

Base sequence effects in double-helical DNA. III. Average properties of curved DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194

DNA structure and flexibility in the sequence-specific binding of papillomavirus E2 proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.95.26.15194