DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator. (Q27932706)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19629037%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

title

DNA polymerase epsilon, acetylases and remodellers cooperate to form a specialized chromatin structure at a tRNA insulator (English)

1 reference

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DNA polymerase epsilon noncatalytic subunit YBR278W

3 February 2020

main subject

1 reference

DNA polymerase epsilon noncatalytic subunit YDR121W

GOA release 2020-03-11

1 reference

GOA release 2020-03-11

author

Jesse R Raab

2

1 reference

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3 February 2020

Oscar M. Aparicio

6

1 reference

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3 February 2020

author name string

Sunil Gangadharan

5

1 reference

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3 February 2020

Rohinton T Kamakaka

8

1 reference

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3 February 2020

Namrita Dhillon

1

1 reference

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3 February 2020

Julie Guzzo

3

1 reference

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3 February 2020

Shawn J Szyjka

4

1 reference

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3 February 2020

Brenda Andrews

7

1 reference

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3 February 2020

language of work or name

English

0 references

publication date

23 July 2009

1 reference

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3 February 2020

2 references

1 December 2016

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19629037%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

volume

28

1 reference

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3 February 2020

issue

17

1 reference

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3 February 2020

page(s)

2583-2600

1 reference

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Histone modifications influence the action of Snf2 family remodelling enzymes by different mechanisms

3 February 2020

cites work

1 reference

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Autoregulation of the Rsc4 Tandem Bromodomain by Gcn5 Acetylation

20 March 2017

1 reference

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Acetylation of lysine 56 of histone H3 catalyzed by RTT109 and regulated by ASF1 is required for replisome integrity

20 March 2017

1 reference

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Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1.

20 March 2017

1 reference

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Structure of the yeast histone H3-ASF1 interaction: implications for chaperone mechanism, species-specific interactions, and epigenetics

20 March 2017

1 reference

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RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation

20 March 2017

1 reference

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Double-stranded DNA binding, an unusual property of DNA polymerase epsilon, promotes epigenetic silencing in Saccharomyces cerevisiae

20 March 2017

1 reference

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The sirtuins hst3 and Hst4p preserve genome integrity by controlling histone h3 lysine 56 deacetylation.

20 March 2017

1 reference

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Fast chromatin immunoprecipitation assay

20 March 2017

1 reference

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Structure of Saccharomyces cerevisiae DNA polymerase epsilon by cryo-electron microscopy.

20 March 2017

1 reference

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Replication-independent histone deposition by the HIR complex and Asf1.

20 March 2017

1 reference

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Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

20 March 2017

1 reference

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Multiple bromodomain genes are involved in restricting the spread of heterochromatic silencing at the Saccharomyces cerevisiae HMR-tRNA boundary

20 March 2017

1 reference

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Simultaneous recruitment of coactivators by Gcn4p stimulates multiple steps of transcription in vivo

20 March 2017

1 reference

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Proteomic and genomic characterization of chromatin complexes at a boundary

20 March 2017

1 reference

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Histone fold protein Dls1p is required for Isw2-dependent chromatin remodeling in vivo

20 March 2017

1 reference

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Noncompetitive counteractions of DNA polymerase epsilon and ISW2/yCHRAC for epigenetic inheritance of telomere position effect in Saccharomyces cerevisiae

20 March 2017

1 reference

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The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress

20 March 2017

1 reference

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RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae

20 March 2017

1 reference

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Structure and function of the fourth subunit (Dpb4p) of DNA polymerase epsilon in Saccharomyces cerevisiae

20 March 2017

1 reference

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The DNA replication fork in eukaryotic cells.

20 March 2017

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The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism

20 March 2017

1 reference

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Systematic genetic analysis with ordered arrays of yeast deletion mutants

20 March 2017

1 reference

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The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin

20 March 2017

1 reference

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The stability of nucleosomes at the replication fork

20 March 2017

1 reference

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An rtt109-independent role for vps75 in transcription-associated nucleosome dynamics

20 March 2017

1 reference

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Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast

29 September 2017

1 reference

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Histone H3 K56 hyperacetylation perturbs replisomes and causes DNA damage

29 September 2017

1 reference

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Schizosaccharomyces pombe Hst4 functions in DNA damage response by regulating histone H3 K56 acetylation

29 September 2017

1 reference

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RSC regulates nucleosome positioning at Pol II genes and density at Pol III genes

29 September 2017

1 reference

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Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase

29 September 2017

1 reference

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Facultative heterochromatin: is there a distinctive molecular signature?

29 September 2017

1 reference

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Sir2 deacetylates histone H3 lysine 56 to regulate telomeric heterochromatin structure in yeast.

29 September 2017

1 reference

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The histone chaperone Asf1 at the crossroads of chromatin and DNA checkpoint pathways

29 September 2017

1 reference

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Histone H3 lysine 36 methylation antagonizes silencing in Saccharomyces cerevisiae independently of the Rpd3S histone deacetylase complex

29 September 2017

1 reference

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29 September 2017

1 reference

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Rsc4 connects the chromatin remodeler RSC to RNA polymerases

29 September 2017

1 reference

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Chromatin remodelling: the industrial revolution of DNA around histones

29 September 2017

1 reference

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Histone H3 variants and their potential role in indexing mammalian genomes: the "H3 barcode hypothesis"

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

The contradictory definitions of heterochromatin: transcription and silencing.

29 September 2017

1 reference

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Analyses of SUM1-1-mediated long-range repression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

A role for cell-cycle-regulated histone H3 lysine 56 acetylation in the DNA damage response.

29 September 2017

1 reference

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Genome-scale identification of nucleosome positions in S. cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

Tandem bromodomains in the chromatin remodeler RSC recognize acetylated histone H3 Lys14

29 September 2017

1 reference

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Assays for gene silencing in yeast

29 September 2017

1 reference

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Domains of gene silencing near the left end of chromosome III in Saccharomyces cerevisiae

29 September 2017

1 reference

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Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.

29 September 2017

1 reference

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Insulators: many functions, many mechanisms.

29 September 2017

1 reference

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The RNA polymerase III transcription apparatus

29 September 2017

1 reference

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The boundaries of the silenced HMR domain in Saccharomyces cerevisiae

29 September 2017

1 reference

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A 5' element of the chicken beta-globin domain serves as an insulator in human erythroid cells and protects against position effect in Drosophila

29 September 2017

1 reference

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The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains

29 September 2017

1 reference

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A nuclease-hypersensitive region forms de novo after chromosome replication

29 September 2017

1 reference

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Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro

29 September 2017

1 reference

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Mapping replication origins in yeast chromosomes

29 September 2017

1 reference

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Deposition of histone onto the replicating chromosome: newly synthesized histone is not found near the replication fork

29 September 2017

1 reference

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Assembly of newly replicated chromatin

29 September 2017

1 reference

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A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

DNA polymerases at the replication fork in eukaryotes

2 June 2018

1 reference

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TFIIIB subunit Bdp1p is required for periodic integration of the Ty1 retrotransposon and targeting of Isw2p to S. cerevisiae tDNAs

2 June 2018

1 reference

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Genome-wide identification of Isw2 chromatin-remodeling targets by localization of a catalytically inactive mutant

2 June 2018

1 reference

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Chromatin disassembly mediated by the histone chaperone Asf1 is essential for transcriptional activation of the yeast PHO5 and PHO8 genes

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

Subunit interactions within the Saccharomyces cerevisiae DNA polymerase epsilon (pol epsilon ) complex. Demonstration of a dimeric pol epsilon

2 June 2018

1 reference

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Electron microscopic analysis of chromatin replication in the cellular blastoderm drosophila melanogaster embryo

2 June 2018

1 reference

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A histone code for chromatin assembly

2 June 2018

1 reference

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Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing

21 January 2018

1 reference

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Mapping global histone acetylation patterns to gene expression

21 January 2018

1 reference

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Cell cycle and checkpoint regulation of histone H3 K56 acetylation by Hst3 and Hst4.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Sir2p and Sas2p opposingly regulate acetylation of yeast histone H4 lysine16 and spreading of heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Requirement of Hos2 histone deacetylase for gene activity in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Recruitment of histone modifications by USF proteins at a vertebrate barrier element

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Dynamics of Replication-Independent Histone Turnover in Budding Yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin

21 January 2018

2 references

https://api.crossref.org/works/10.1038%2FEMBOJ.2009.198

21 January 2018

12 December 2020

Dual nature of newly replicated chromatin. Evidence for nucleosomal and non-nucleosomal DNA at the site of native replication forks.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2738695

27 November 2018

Barrier function at HMR

1 reference

12 December 2020

tRNA genes as chromatin barriers

1 reference

12 December 2020

Yeast chromatin structure

1 reference

12 December 2020

Histone deacetylation is required for the maturation of newly replicated chromatin

1 reference

12 December 2020

DNA replication fork pause sites dependent on transcription

1 reference

12 December 2020

Immunological analysis of yeast chromatin

1 reference

12 December 2020

Identifiers

DOI

10.1038/EMBOJ.2009.198

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19629037%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19629037%20AND%20SRC:MED&resulttype=core&format=json

3 February 2020

2 references

1 December 2016