Yeast DEAD box protein Mss116p is a transcription elongation factor that modulates the activity of mitochondrial RNA polymerase (Q27934495)

1 December 2016

title

Yeast DEAD box protein Mss116p is a transcription elongation factor that modulates the activity of mitochondrial RNA polymerase (English)

1 reference

ATP-dependent RNA helicase YDR194C

1 December 2016

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1 reference

GOA release 2020-03-11

author name string

Dmitriy A Markov

1

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Ireneusz D Wojtas

2

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Kassandra Tessitore

3

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Simmone Henderson

4

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William T McAllister

Molecular and Cellular Biology

5

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language of work or name

English

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publication date

July 2014

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published in

1 reference

describes a project that uses

1 December 2016

volume

34

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issue

13

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page(s)

2360-9

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ImageQuant

1 reference

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4054322/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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TEFM (c17orf42) is necessary for transcription of human mtDNA

20 March 2017

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Human mitochondrial transcription revisited: only TFAM and TFB2M are required for transcription of the mitochondrial genes in vitro

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Multiple functions of yeast mitochondrial transcription factor Mtf1p during initiation

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Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

20 March 2017

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ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding

20 March 2017

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In vitro reconstitution and characterization of the yeast mitochondrial degradosome complex unravels tight functional interdependence.

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Human mitochondrial ribosomal protein MRPL12 interacts directly with mitochondrial RNA polymerase to modulate mitochondrial gene expression

20 March 2017

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The splicing of yeast mitochondrial group I and group II introns requires a DEAD-box protein with RNA chaperone function

20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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20 March 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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RNA transcript 3'-proximal sequence affects translocation bias of RNA polymerase

29 September 2017

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E. coli NusG inhibits backtracking and accelerates pause-free transcription by promoting forward translocation of RNA polymerase

29 September 2017

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29 September 2017

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Identification of proteins associated with the yeast mitochondrial RNA polymerase by tandem affinity purification.

29 September 2017

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Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation

29 September 2017

1 reference

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RNA polymerase elongation factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

The DEAD box RNA helicases p68 (Ddx5) and p72 (Ddx17): novel transcriptional co-regulators.

29 September 2017

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Molecular dynamics studies of the energetics of translocation in model T7 RNA polymerase elongation complexes

29 September 2017

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Coordination of gene expression between organellar and nuclear genomes

29 September 2017

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Initiation and beyond: multiple functions of the human mitochondrial transcription machinery

29 September 2017

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The regulatory roles and mechanism of transcriptional pausing

29 September 2017

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RNA damage and surveillance under oxidative stress

29 September 2017

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DExD/H box RNA helicases: multifunctional proteins with important roles in transcriptional regulation

29 September 2017

1 reference

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Elongation complexes of Thermus thermophilus RNA polymerase that possess distinct translocation conformations

29 September 2017

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Bacterial transcription elongation factors: new insights into molecular mechanism of action

29 September 2017

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Messenger RNA stability in mitochondria: different means to an end.

29 September 2017

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The division of endosymbiotic organelles

29 September 2017

1 reference

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E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Efficient pyrophosphorolysis by a hepatitis B virus polymerase may be a primer-unblocking mechanism

29 September 2017

1 reference

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Nam1p, a protein involved in RNA processing and translation, is coupled to transcription through an interaction with yeast mitochondrial RNA polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Processivity of T7 RNA polymerase requires the C-terminal Phe882-Ala883-COO- or "foot".

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

ATP-dependent roles of the DEAD-box protein Mss116p in group II intron splicing in vitro and in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Unwinding by local strand separation is critical for the function of DEAD-box proteins as RNA chaperones

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Allosteric control of the RNA polymerase by the elongation factor RfaH

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Balance between transcription and RNA degradation is vital for Saccharomyces cerevisiae mitochondria: reduced transcription rescues the phenotype of deficient RNA degradation

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

In vivo evidence for back and forth oscillations of the transcription elongation complex

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Self-coded 3'-extension of run-off transcripts produces aberrant products during in vitro transcription with T7 RNA polymerase

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

The mechanism of pyrophosphorolysis of RNA by RNA polymerase. Endowment of RNA polymerase with artificial exonuclease activity

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Yeast mitochondrial RNA polymerase is homologous to those encoded by bacteriophages T3 and T7.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Flexible recognition of rapidly evolving promoter sequences by mitochondrial transcription factor 1.

2 June 2018

1 reference

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Mutations in T7 RNA polymerase that support the proposal for a common polymerase active site structure

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Transient state kinetics of transcription elongation by T7 RNA polymerase.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Mitochondrial transcription factor A regulates mtDNA copy number in mammals

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Overexpressed yeast mitochondrial putative RNA helicase Mss116 partially restores proper mtRNA metabolism in strains lacking the Suv3 mtRNA helicase.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

The transcriptional regulator RfaH stimulates RNA chain synthesis after recruitment to elongation complexes by the exposed nontemplate DNA strand.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

Characterization of halted T7 RNA polymerase elongation complexes reveals multiple factors that contribute to stability

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4054322

A DEAD protein that activates intron self-splicing without unwinding RNA

27 November 2018

1 reference

12 December 2020

The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex

1 reference

12 December 2020

Major conformational changes occur during the transition from an initiation complex to an elongation complex by T7 RNA polymerase

1 reference

12 December 2020

The DExH box protein Suv3p is a component of a yeast mitochondrial 3'-to-5' exoribonuclease that suppresses group I intron toxicity

1 reference

12 December 2020

Initiation, elongation, and processivity of carboxyl-terminal mutants of T7 RNA polymerase

1 reference

12 December 2020

Template strand switching by T7 RNA polymerase

1 reference

12 December 2020

Mitochondrial transcription is regulated via an ATP "sensing" mechanism that couples RNA abundance to respiration

1 reference

12 December 2020

Identifiers

1 reference

1 December 2016

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1 reference