Cofactor-dependent specificity of a DEAD-box protein (Q27936164)

Proceedings of the National Academy of Sciences of the United States of America

GOA release 2020-03-11

3

Katrin Karbstein

0 references

Sohail Khoshnevis

series ordinal

2

object named as

Sohail Khoshnevis

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author name string

Crystal L Young

series ordinal

1

0 references

language of work or name

English

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publication date

16 July 2013

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published in

1 reference

1 December 2016

110

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issue

29

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page(s)

E2668-76

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cites work

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Human eIF4AIII interacts with an eIF4G-like partner, NOM1, revealing an evolutionarily conserved function outside the exon junction complex

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The Dbp5 cycle at the nuclear pore complex during mRNA export II: nucleotide cycling and mRNP remodeling by Dbp5 are controlled by Nup159 and Gle1

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A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export

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Comparative Structural Analysis of Human DEAD-Box RNA Helicases

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RNA helicases at work: binding and rearranging

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Prp43p contains a processive helicase structural architecture with a specific regulatory domain

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RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1.

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Structure of the Yeast DEAD Box Protein Mss116p Reveals Two Wedges that Crimp RNA

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The DEXD/H-box RNA Helicase DDX19 Is Regulated by an -Helical Switch

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The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner

20 March 2017

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Differential RNA-dependent ATPase activities of four rRNA processing yeast DEAD-box proteins

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Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions

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Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome

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Involvement of DEAD-box proteins in group I and group II intron splicing. Biochemical characterization of Mss116p, ATP hydrolysis-dependent and -independent mechanisms, and general RNA chaperone activity

20 March 2017

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Dead-box proteins: a family affair--active and passive players in RNP-remodeling

20 March 2017

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The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA

20 March 2017

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Activation of the DExD/H-box protein Dbp5 by the nuclear-pore protein Gle1 and its coactivator InsP6 is required for mRNA export

20 March 2017

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The nucleolar protein Esf2 interacts directly with the DExD/H box RNA helicase, Dbp8, to stimulate ATP hydrolysis

20 March 2017

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Discriminatory RNP remodeling by the DEAD-box protein DED1.

20 March 2017

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Prp43p is a DEAH-box spliceosome disassembly factor essential for ribosome biogenesis

20 March 2017

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The splicing factor Prp43p, a DEAH box ATPase, functions in ribosome biogenesis

20 March 2017

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Spliceosome disassembly catalyzed by Prp43 and its associated components Ntr1 and Ntr2.

20 March 2017

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An essential GTPase promotes assembly of preribosomal RNA processing complexes

20 March 2017

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ATP- and ADP-dependent modulation of RNA unwinding and strand annealing activities by the DEAD-box protein DED1.

20 March 2017

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Structural basis for the enhancement of eIF4A helicase activity by eIF4G.

20 March 2017

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Characterization of the ATPase and unwinding activities of the yeast DEAD-box protein Has1p and the analysis of the roles of the conserved motifs

20 March 2017

1 reference

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Dbp9p, a member of the DEAD box protein family, exhibits DNA helicase activity

20 March 2017

1 reference

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Solution structure and RNA interactions of the RNA recognition motif from eukaryotic translation initiation factor 4B

20 March 2017

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Deletions in the S1 domain of Rrp5p cause processing at a novel site in ITS1 of yeast pre-rRNA that depends on Rex4p

20 March 2017

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Characterization and mutational analysis of yeast Dbp8p, a putative RNA helicase involved in ribosome biogenesis

20 March 2017

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The RNA export factor Gle1p is located on the cytoplasmic fibrils of the NPC and physically interacts with the FG-nucleoporin Rip1p, the DEAD-box protein Rat8p/Dbp5p and a new protein Ymr 255p

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3718167

Interaction of translation initiation factor eIF4G with eIF4A in the yeast Saccharomyces cerevisiae

20 March 2017

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Ded1p, a DEAD-box protein required for translation initiation in Saccharomyces cerevisiae, is an RNA helicase

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3718167

Rok1p is a putative RNA helicase required for rRNA processing

20 March 2017

1 reference

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RRP5 is required for formation of both 18S and 5.8S rRNA in yeast

20 March 2017

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20 March 2017

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Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis

20 March 2017

1 reference

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Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA

20 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3718167

Antisense snoRNAs: a family of nucleolar RNAs with long complementarities to rRNA

20 March 2017

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Tetratrico peptide repeat interactions: to TPR or not to TPR?

20 March 2017

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Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa

20 March 2017

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Specific domains in yeast translation initiation factor eIF4G strongly bias RNA unwinding activity of the eIF4F complex toward duplexes with 5'-overhangs

29 September 2017

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Dbp5, Gle1-IP6 and Nup159: a working model for mRNP export

29 September 2017

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Gle1 is a multifunctional DEAD-box protein regulator that modulates Ded1 in translation initiation

29 September 2017

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Duplex unwinding and ATPase activities of the DEAD-box helicase eIF4A are coupled by eIF4G and eIF4B

29 September 2017

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From unwinding to clamping - the DEAD box RNA helicase family

29 September 2017

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eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism

29 September 2017

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The mechanism of ATP-dependent RNA unwinding by DEAD box proteins

29 September 2017

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A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit

29 September 2017

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ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.

29 September 2017

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A conserved phenylalanine of motif IV in superfamily 2 helicases is required for cooperative, ATP-dependent binding of RNA substrates in DEAD-box proteins

29 September 2017

1 reference

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Structural insights into the exon junction complex

29 September 2017

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Dynamic interactions of Ntr1-Ntr2 with Prp43 and with U5 govern the recruitment of Prp43 to mediate spliceosome disassembly

29 September 2017

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RNA helicases--one fold for many functions

29 September 2017

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Nonspecific binding to structured RNA and preferential unwinding of an exposed helix by the CYT-19 protein, a DEAD-box RNA chaperone

29 September 2017

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Remodeling of ribonucleoprotein complexes with DExH/D RNA helicases

29 September 2017

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DEAD-box RNA helicases in Escherichia coli

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U3 snoRNP and Rrp5p associate independently with Saccharomyces cerevisiae 35S pre-rRNA, but Rrp5p is essential for association of Rok1p

29 September 2017

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29 September 2017

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The ATPase, RNA unwinding, and RNA binding activities of recombinant p68 RNA helicase

29 September 2017

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Rearrangement of structured RNA via branch migration structures catalysed by the highly related DEAD-box proteins p68 and p72.

29 September 2017

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Two mutant forms of the S1/TPR-containing protein Rrp5p affect the 18S rRNA synthesis in Saccharomyces cerevisiae

29 September 2017

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Prp43: An RNA helicase-like factor involved in spliceosome disassembly

29 September 2017

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DbpA: a DEAD box protein specifically activated by 23s rRNA.

29 September 2017

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Ribosome assembly factors prevent premature translation initiation by 40S assembly intermediates

29 September 2017

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2 June 2018

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2 June 2018

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2 June 2018

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2 June 2018

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2 June 2018

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2 June 2018

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The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA.

2 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1302577110

The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes

21 January 2018

1 reference

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The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide

21 January 2018

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Studies on three E. coli DEAD-box helicases point to an unwinding mechanism different from that of model DNA helicases

21 January 2018

1 reference

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Active disruption of an RNA-protein interaction by a DExH/D RNA helicase

21 January 2018

1 reference

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Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase.

21 January 2018

1 reference

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Probing the Tetrahymena group I ribozyme reaction in both directions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1302577110

The DEAD-box protein Ded1 unwinds RNA duplexes by a mode distinct from translocating helicases

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1302577110

Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23630256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Biochemical and kinetic characterization of the RNA helicase activity of eukaryotic initiation factor 4A

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23630256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1302577110

1 reference

907020

ADS bibcode

2013PNAS..110E2668Y

0 references

907020

1 reference

1 reference

1 reference