Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA. (Q27936202)

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English	Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA.	scientific article

Statements

scholarly article

1 reference

1 December 2016

Nuclear RNA surveillance in Saccharomyces cerevisiae: Trf4p-dependent polyadenylation of nascent hypomethylated tRNA and an aberrant form of 5S rRNA. (English)

1 reference

1 December 2016

Saccharomyces cerevisiae

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nuclear polyadenylation-dependent mRNA catabolic process

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Gene Ontology release 2020-05-02

Gene Ontology ID

ncRNA polyadenylation

1 reference

Gene Ontology release 2020-05-02

Gene Ontology ID

1 reference

Gene Ontology release 2020-05-02

Gene Ontology ID

Non-canonical poly(A) polymerase TRF5 YNL299W

1 reference

GOA release 2020-03-11

Exosome catalytic subunit DIS3 YOL021C

1 reference

GOA release 2020-03-11

Exosome nuclease subunit RRP6 YOR001W

1 reference

GOA release 2020-03-11

Non-canonical poly(A) polymerase PAP2 YOL115W

1 reference

GOA release 2020-03-11

author name string

Sujatha Kadaba

1

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Xuying Wang

2

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James T Anderson

3

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language of work or name

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publication date

March 2006

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1 reference

1 December 2016

12

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3

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508-21

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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

A new yeast poly(A) polymerase complex involved in RNA quality control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Polyadenylation of rRNA in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

The yin and yang of the exosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Yeast exosome mutants accumulate 3'-extended polyadenylated forms of U4 small nuclear RNA and small nucleolar RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Functions of the exosome in rRNA, snoRNA and snRNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

The essential Gcd10p-Gcd14p nuclear complex is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

The exosome: a conserved eukaryotic RNA processing complex containing multiple 3'-->5' exoribonucleases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

The 3 A crystal structure of yeast initiator tRNA: functional implications in initiator/elongator discrimination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

tRNA transfers to the limelight

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

The exosome, a molecular machine for controlled RNA degradation in both nucleus and cytoplasm

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

3'-End processing of pre-mRNA in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

20 March 2017

Preparation of high molecular weight RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

7 April 2017

New perspectives on connecting messenger RNA 3' end formation to transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

A La protein requirement for efficient pre-tRNA folding.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

A history of poly A sequences: from formation to factors to function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

RNA quality control: degradation of defective transfer RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Structure/function analysis of the Saccharomyces cerevisiae Trf4/Pol sigma DNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Pol kappa: A DNA polymerase required for sister chromatid cohesion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

GCD14p, a repressor of GCN4 translation, cooperates with Gcd10p and Lhp1p in the maturation of initiator methionyl-tRNA in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

A dependent pathway of cytoplasmic polyadenylation reactions linked to cell cycle control by c-mos and CDK1 activation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Pleiotropic effects of intron removal on base modification pattern of yeast tRNAPhe: an in vitro study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Architecture of a yeast U6 RNA gene promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Mutational analysis of Saccharomyces cerevisiae U4 small nuclear RNA identifies functionally important domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Tandemly arranged variant 5S ribosomal RNA genes in the yeast Saccharomyces cerevisiae

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29 September 2017

Three-Dimensional Tertiary Structure of Yeast Phenylalanine Transfer RNA

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

In vivo pre-tRNA processing in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Mutational analysis of conserved positions potentially important for initiator tRNA function in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Transcription termination by RNA polymerase III: uncoupling of polymerase release from termination signal recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

29 September 2017

Altered maturation of sequences at the 3' terminus of 5S gene transcripts in a Saccharomyces cerevisiae mutant that lacks a RNA processing endonuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

2 June 2018

Intron-dependent enzymatic formation of modified nucleosides in eukaryotic tRNAs: a review

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

2 June 2018

In vitro transcripts of a yeast variant 5 S rRNA gene exhibit alterations in 3'-end processing and protein binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

2 June 2018

Poly(A) polymerase and the regulation of cytoplasmic polyadenylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1383588

27 November 2018

Purification of yeast exosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription and in vitro processing of yeast 5 S rRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of yeast tRNAAsp

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purified RNA polymerase III accurately and efficiently terminates transcription of 5s RNA genes

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Purified lupus antigen La recognizes an oligouridylate stretch common to the 3' termini of RNA polymerase III transcripts

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effects of protein synthesis inhibition, and of mutations rna1.1 and rna82.1, on the synthesis of small RNAs in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ribosomal 5 S rRNA maturation in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16431988

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1261/RNA.2305406

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

ResearchGate publication ID

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