The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability (Q28030951)

1

Jing-Woei Li

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Bernardo J. Clavijo

Bernardo J Clavijo

7

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Dan Bolser

Dan Bolser

2

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Daniel R Zerbino

Daniel Zerbino

10

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Björn Usadel

Björn Usadel

6

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Federico Manuel Giorgi

Federico Manuel Giorgi

4

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Maria Victoria Schneider

11

Maria Victoria Schneider

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author name string

Nikolay Vyahhi

5

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Ting-Fung Chan

8

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Nathalie Wong

Briefings in Bioinformatics

9

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language of work or name

English

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publication date

September 2013

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number of pages

8

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published in

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volume

14

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issue

5

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page(s)

548-55

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copyright license

Creative Commons Attribution 3.0 Unported

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copyright status

copyrighted

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cites work

Internet encyclopaedias go head to head

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Seeking health information online: does Wikipedia matter?

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Navigating the changing learning landscape: perspective from bioinformatics.ca

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Ten simple rules for getting help from online scientific communities

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

A practical comparison of de novo genome assembly software tools for next-generation sequencing technologies

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Sequencing technologies - the next generation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

The Sequence Alignment/Map format and SAMtools

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

The Bio* toolkits--a brief overview

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Reuse of public genome-wide gene expression data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

The variant call format and VCFtools

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Applications of next-generation sequencing technologies in functional genomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

BioStar: An Online Question & Answer Resource for the Bioinformatics Community

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Next-generation sequencing: a challenge to meet the increasing demand for training workshops in Australia

9 May 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

A survey of tools for variant analysis of next-generation genome sequencing data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

A comprehensive evaluation of alignment algorithms in the context of RNA-seq

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Tools for mapping high-throughput sequencing data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

SEQanswers: an open access community for collaboratively decoding genomes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

What can next generation sequencing do for you? Next generation sequencing as a valuable tool in plant research.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Broader incorporation of bioinformatics in education: opportunities and challenges

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Bioinformatics training: a review of challenges, actions and support requirements.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

A survey of sequence alignment algorithms for next-generation sequencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Assembly algorithms for next-generation sequencing data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Computing has changed biology--biology education must catch up.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Next-generation sequencing transforms today's biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Predicting cancer drivers: are we there yet?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Developing an online programme in computational biology

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Next-generation sequencing data interpretation: enhancing reproducibility and accessibility

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3771235

Two or three myths about bioinformatics

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23793381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bioinformatics training in the USA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23793381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

GeneProf: analysis of high-throughput sequencing experiments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23793381

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIB/BBT045

0 references

DBLP publication ID

journals/bib/LiBMGVUCCWZS13

1 reference