Reverse enGENEering of Regulatory Networks from Big Data: A Roadmap for Biologists (Q28083193)

A Yambartsev

2

1 reference

L Thomas

3

1 reference

N Shulzhenko

4

1 reference

S Ramsey

5

1 reference

X Dong

6

1 reference

language of work or name

1 reference

29 April 2015

1 reference

Bioinformatics and Biology Insights

published in

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volume

9

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page(s)

61-74

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Epigenome-guided analysis of the transcriptome of plaque macrophages during atherosclerosis regression reveals activation of the Wnt signaling pathway

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Controllability of complex networks.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

An introduction to causal inference.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Bottlenecks and hubs in inferred networks are important for virulence in Salmonella typhimurium

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

SIRENE: supervised inference of regulatory networks

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

A global pathway crosstalk network

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

NetworkBLAST: comparative analysis of protein networks.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Computing topological parameters of biological networks.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Comparing protein interaction networks via a graph match-and-split algorithm

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Diffusion kernel-based logistic regression models for protein function prediction

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Use of within-array replicate spots for assessing differential expression in microarray experiments.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Finding disease specific alterations in the co-expression of genes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Protein complex prediction via cost-based clustering.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

IDEG6: a web tool for detection of differentially expressed genes in multiple tag sampling experiments.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4415676

Guilt-by-association goes global

27 November 2018

1 reference

12 December 2020

The Th1 /Th2 immune-type response of the recurrent aphthous ulceration analyzed by cDNA microarray

1 reference

12 December 2020

Assortative mixing in directed biological networks

1 reference

12 December 2020

Unexpected links reflect the noise in networks.

1 reference

12 December 2020