Orchestrating high-throughput genomic analysis with Bioconductor (Q28084527)

Hector Corrada Bravo

7

0 references

Michael I Love

Michael I Love

16

0 references

Simon Anders

Simon Anders

4

0 references

Sean Davis

Sean Davis

8

0 references

Kasper D. Hansen

Kasper D Hansen

13

0 references

Levi Waldron

Levi Waldron

25

0 references

Wolfgang Huber

Wolfgang Huber

1

0 references

Alejandro Reyes

Alejandro Reyes

21

0 references

Benilton Carvalho

Benilton S Carvalho

6

0 references

Gordon K Smyth

23

Gordon K Smyth

1 reference

3

Robert Gentleman

1 reference

11

Raphael Gottardo

1 reference

14

Rafael A Irizarry

1 reference

Martin Morgan

26

0 references

Thomas Girke

Thomas Girke

10

0 references

author name string

Vincent J Carey

2

1 reference

Marc Carlson

5

1 reference

Florian Hahne

12

1 reference

Michael Lawrence

15

1 reference

James MacDonald

17

1 reference

Valerie Obenchain

18

1 reference

Andrzej K Oleś

19

1 reference

Hervé Pagès

20

1 reference

Paul Shannon

22

1 reference

Dan Tenenbaum

24

1 reference

language of work or name

1 reference

February 2015

1 reference

1 reference

12

1 reference

PubMed

page(s)

115-21

1 reference

https://www.ncbi.nlm.nih.gov/pubmed/25633503

PubMed

issue

2

1 reference

1 reference

Comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer

26 April 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

An integrated encyclopedia of DNA elements in the human genome

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Differential expression analysis for sequence count data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

The Sequence Alignment/Map format and SAMtools

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Bioconductor: open software development for computational biology and bioinformatics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

IPython: A System for Interactive Scientific Computing

20 March 2017

1 reference

https://api.crossref.org/works/10.1038/NMETH.3252

Scalable Genomics with R and Bioconductor

22 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3252

OpenCyto: an open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Epiviz: interactive visual analytics for functional genomics data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Waste not, want not: why rarefying microbiome data is inadmissible

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variants

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

The anatomy of successful computational biology software

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Software for computing and annotating genomic ranges

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Detecting differential usage of exons from RNA-seq data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Reproducible research: a bioinformatics case study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Identification of regulatory networks in HSCs and their immediate progeny via integrated proteome, transcriptome, and DNA methylome analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509590

27 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/25633503

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.3252

1 reference

Dimensions Publication ID

133468

1050075164

0 references

133468

1 reference

1 reference

1 reference