Methodologies and perspectives of proteomics applied to filamentous fungi: from sample preparation to secretome analysis (Q28085717)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25775160%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

Linda Bianco

series ordinal

1

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25775160%20AND%20SRC:MED&resulttype=core&format=json

International Journal of Molecular Sciences

6 June 2020

language of work or name

1 reference

12 March 2015

3 references

22 October 2019

25 November 2020

4 references

22 October 2019

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6 June 2020

25 November 2020

16

2 references

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6 June 2020

issue

3

2 references

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6 June 2020

page(s)

5803-5829

1 reference

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Creative Commons Attribution

6 June 2020

copyright license

2 references

22 October 2019

25 November 2020

0 references

Systems biological approaches towards understanding cellulase production by Trichoderma reesei

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Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

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Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78

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Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analyses

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20 March 2017

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Quantitative secretomic analysis of Trichoderma reesei strains reveals enzymatic composition for lignocellulosic biomass degradation

20 March 2017

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Label-free quantitative analysis of one-dimensional PAGE LC/MS/MS proteome: application on angiotensin II-stimulated smooth muscle cells secretome

20 March 2017

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Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

20 March 2017

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

7 April 2017

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7 April 2017

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Hydrolysis of lignocellulosic materials for ethanol production: a review

7 April 2017

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The Q Exactive HF, a Benchtop mass spectrometer with a pre-filter, high-performance quadrupole and an ultra-high-field Orbitrap analyzer

7 April 2017

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Comparative proteomic analysis of different developmental stages of the edible mushroom Termitomyces heimii

29 September 2017

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Comparative analysis of secretomes in basidiomycete fungi.

29 September 2017

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Temporal alterations in the secretome of the selective ligninolytic fungus Ceriporiopsis subvermispora during growth on aspen wood reveal this organism's strategy for degrading lignocellulose.

29 September 2017

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Anthraquinone dyes decolorization capacity of anamorphic Bjerkandera adusta CCBAS 930 strain and its HRP-like negative mutants.

29 September 2017

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Whole gel processing procedure for GeLC-MS/MS based proteomics

29 September 2017

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Protein abundance in multiplexed samples (PAMUS) for quantitation of Trichoderma reesei secretome

29 September 2017

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Current status and advances in quantitative proteomic mass spectrometry.

29 September 2017

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A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

29 September 2017

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Quantitative proteomic analysis of secretome of microbial consortium during saw dust utilization

29 September 2017

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Quantitative mass spectrometry in proteomics: critical review update from 2007 to the present

29 September 2017

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Post-genomic analyses of fungal lignocellulosic biomass degradation reveal the unexpected potential of the plant pathogen Ustilago maydis

29 September 2017

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Quantitative proteomic analysis of lignocellulolytic enzymes by Phanerochaete chrysosporium on different lignocellulosic biomass

29 September 2017

1 reference

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Fungal biodegradation and enzymatic modification of lignin.

29 September 2017

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The proteomic signature of Aspergillus fumigatus during early development

29 September 2017

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29 September 2017

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29 September 2017

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Analysis of the Aspergillus fumigatus proteome reveals metabolic changes and the activation of the pseurotin A biosynthesis gene cluster in response to hypoxia

29 September 2017

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An inventory of the Aspergillus niger secretome by combining in silico predictions with shotgun proteomics data

29 September 2017

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Proteomics of industrial fungi: trends and insights for biotechnology

29 September 2017

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Mass spectrometry–based proteomics in cell biology

29 September 2017

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Potential use of filamentous fungi for wastewater sludge treatment

29 September 2017

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The intra- and extracellular proteome of Aspergillus niger growing on defined medium with xylose or maltose as carbon substrate

29 September 2017

1 reference

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Proteome analysis of the penicillin producer Penicillium chrysogenum: characterization of protein changes during the industrial strain improvement

29 September 2017

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Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

29 September 2017

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Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina

29 September 2017

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Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

29 September 2017

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Proteomic analysis of the phytopathogenic fungus Botrytis cinerea during cellulose degradation.

29 September 2017

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Lignocellulosic residues: biodegradation and bioconversion by fungi.

29 September 2017

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

29 September 2017

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Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood

29 September 2017

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Fungal secretomes--nature's toolbox for white biotechnology

29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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Expression analysis of extracellular proteins from Phanerochaete chrysosporium grown on different liquid and solid substrates

29 September 2017

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Proteomics of filamentous fungi

29 September 2017

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Protein accumulation in the germinating Uromyces appendiculatus uredospore

29 September 2017

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Advances in fungal proteomics

29 September 2017

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Phanerochaete chrysosporium soluble proteome as a prelude for the analysis of heavy metal stress response

29 September 2017

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Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

29 September 2017

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Proteome mapping of the Trichoderma reesei 20S proteasome.

29 September 2017

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The structure and synthesis of the fungal cell wall

29 September 2017

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Proteome analysis of mitochondrial outer membrane from Neurospora crassa

29 September 2017

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Metabolic regulation at the tricarboxylic acid and glyoxylate cycles of the lignin-degrading basidiomycete Phanerochaete chrysosporium against exogenous addition of vanillin.

29 September 2017

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The development of the DIGE system: 2D fluorescence difference gel analysis technology

29 September 2017

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Proteomic response of the biological control fungus Trichoderma atroviride to growth on the cell walls of Rhizoctonia solani

29 September 2017

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Production of large multienzyme complex by aerobic thermophilic fungus Chaetomium sp. nov. MS-017 grown on palm oil mill fibre

29 September 2017

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Structural characterization of lignin during Pinus taeda wood treatment with Ceriporiopsis subvermispora

29 September 2017

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Fungal proteomics: initial mapping of biological control strain Trichoderma harzianum

29 September 2017

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Directed evolution of industrial enzymes: an update

29 September 2017

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Biotechnology in the wood industry.

29 September 2017

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Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

29 September 2017

1 reference

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18O labeling: a tool for proteomics

29 September 2017

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Feasibility of bioremediation by white-rot fungi

29 September 2017

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Use of thiourea to increase the solubility of membrane proteins in two-dimensional electrophoresis

29 September 2017

1 reference

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Differential proteomic analysis of the secretome of Irpex lacteus and other white-rot fungi during wheat straw pretreatment

29 September 2017

1 reference

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Optimization of a protein extraction technique for fungal proteomics

2 June 2018

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System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap

2 June 2018

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Profiling the Aspergillus fumigatus Proteome in Response to Caspofungin

2 June 2018

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The Penicillium Chrysogenum Extracellular Proteome. Conversion from a Food-rotting Strain to a Versatile Cell Factory for White Biotechnology

2 June 2018

1 reference

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Shotgun proteomics of Aspergillus niger microsomes upon D-xylose induction.

2 June 2018

1 reference

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Novel thermotolerant laccases produced by the white-rot fungus Physisporinus rivulosus.

2 June 2018

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Sugar oxidoreductases and veratryl alcohol oxidase as related to lignin degradation.

2 June 2018

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Improvement of the solubilization of proteins in two-dimensional electrophoresis with immobilized pH gradients

2 June 2018

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Hydroxyl radical generation by an extracellular low-molecular-weight substance and phenol oxidase activity during wood degradation by the white-rot basidiomycete Trametes versicolor

2 June 2018

1 reference

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The stability of extracellular beta-glucosidase from Aspergillus niger is significantly enhanced by non-covalently attached polysaccharides

21 January 2018

1 reference

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Comparison of lysis methods and preparation protocols for one- and two-dimensional electrophoresis of Aspergillus oryzae intracellular proteins.

21 January 2018

1 reference

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Proteomic analyses of Fusarium graminearum grown under mycotoxin-inducing conditions.

21 January 2018

1 reference

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Proteome analysis of rice blast fungus (Magnaporthe grisea) proteome during appressorium formation

21 January 2018

1 reference

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Solubilization of trichloroacetic acid (TCA) precipitated microbial proteins via naOH for two-dimensional electrophoresis

21 January 2018

1 reference

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Improved 2-DE of microorganisms after acidic extraction.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Optimized protocol for the 2-DE of extracellular proteins from higher basidiomycetes inhabiting lignocellulose.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Quantitative iTRAQ secretome analysis of Aspergillus niger reveals novel hydrolytic enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Blue native-PAGE analysis of Trichoderma harzianum secretome reveals cellulases and hemicellulases working as multienzymatic complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Iron-regulated proteins in Phanerochaete chrysosporium and Lentinula edodes: differential analysis by sodium dodecyl sulfate polyacrylamide gel electrophoresis and two-dimensional polyacrylamide gel electrophoresis profiles

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Modified MuDPIT separation identified 4488 proteins in a system-wide analysis of quiescence in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Rapid and deep proteomes by faster sequencing on a benchtop quadrupole ultra-high-field Orbitrap mass spectrometer

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Deuterium isobaric amine-reactive tags for quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Novel and cost-effective 6-plex isobaric tagging reagent, DiART, is effective for identification and relative quantification of complex protein mixtures using PQD fragmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Quantitative proteomic approach for cellulose degradation by Neurospora crassa

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Label free quantitative proteomic analysis of secretome by Thermobifida fusca on different lignocellulosic biomass

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Proteomic analysis of temperature dependent extracellular proteins from Aspergillus fumigatus grown under solid-state culture condition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

The Phanerochaete chrysosporium secretome: database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Differences in the secretion pattern of oxidoreductases from Bjerkandera adusta induced by a phenolic olive mill extract.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Scale-up of a bioprocess for textile wastewater treatment using Bjerkandera adusta

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Functional and quantitative proteomics using SILAC

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Correlation of Relative Abundance Ratios Derived from Peptide Ion Chromatograms and Spectrum Counting for Quantitative Proteomic Analysis Using Stable Isotope Labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS16035803

Insights into lignin degradation and its potential industrial applications.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4394507

Proteins associated with the cell envelope of Trichoderma reesei: a proteomic approach

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4394507

iTRAQ-based quantitative secretome analysis of Phanerochaete chrysosporium

27 November 2018

1 reference

12 December 2020

SILAC yeast: from labeling to comprehensive proteome quantification

1 reference

12 December 2020

Lignocellulose degradation and enzyme production by Irpex lacteus CD2 during solid-state fermentation of corn stover

1 reference

12 December 2020

Proteomic analysis in non-denaturing condition of the secretome reveals the presence of multienzyme complexes in Penicillium purpurogenum

1 reference

12 December 2020

Proteomics-based Compositional Analysis of Complex Cellulase–Hemicellulase Mixtures

1 reference

12 December 2020

Proteomics analysis of "Rovabiot Excel", a secreted protein cocktail from the filamentous fungus Penicillium funiculosum grown under industrial process fermentation

1 reference

12 December 2020

Is cellobiose dehydrogenase from Phanerochaete chrysosporium a lignin degrading enzyme?

1 reference

12 December 2020

Development of a sample preparation method for fungal proteomics

1 reference

12 December 2020

Isolation and enrichment of secreted proteins from filamentous fungi

1 reference

12 December 2020

Identifiers

DOI

10.3390/IJMS16035803

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25775160%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25775160%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25775160%20AND%20SRC:MED&resulttype=core&format=json