Isochores and the evolutionary genomics of vertebrates (Q28141033)

CpG islands: features and distribution in the genomes of vertebrates

Europe PubMed Central

title

Isochores and the evolutionary genomics of vertebrates (English)

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G Bernardi

1

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language of work or name

English

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publication date

4 January 2000

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published in

Gene

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volume

241

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issue

1

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page(s)

3-17

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cites work

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CpG islands, genes and isochores in the genomes of vertebrates

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Synonymous and nonsynonymous substitutions in mammalian genes: intragenic correlations

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Chromatography of Nucleic Acids on Hydroxyapatite

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The isochore organization of the human genome

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The isochore organization of the human genome and its evolutionary history--a review

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Compositional constraints and genome evolution

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Compositional patterns in the nuclear genome of cold-blooded vertebrates

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Compositional transitions in the nuclear genomes of cold-blooded vertebrates

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The specificity of deoxyribonucleases and their use in nucleotide sequence studies

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The major compositional transitions in the vertebrate genome

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Silent substitutions in mammalian genomes and their evolutionary implications

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Compositional patterns in vertebrate genomes: conservation and change in evolution

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The mosaic genome of warm-blooded vertebrates

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Compositional mapping of the human dystrophin-encoding gene

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Repeated sequences in DNA. Hundreds of thousands of copies of DNA sequences have been incorporated into the genomes of higher organisms

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7 January 2021

Single-copy sequence homology among the GC-richest isochores of the genomes from warm-blooded vertebrates

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7 January 2021

Nonrandom frequency patterns of synonymous substitutions in homologous mammalian genes

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Correlations of nucleotide substitution rates and base composition of mammalian coding sequences with protein structure.

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Human coding and noncoding DNA: compositional correlations

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Isolation and characterization of mouse and guinea pig satellite deoxyribonucleic acids

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Different hydrophobicities of orthologous proteins from Xenopus and human.

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A compositional map of human chromosome band Xq28

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7 January 2021

A compositional map of the cen-q21 region of human chromosome 21

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7 January 2021

A universal compositional correlation among codon positions

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7 January 2021

Evolutionary genomics of vertebrates and its implications.

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7 January 2021

The correlation of protein hydropathy with the base composition of coding sequences

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7 January 2021

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

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7 January 2021

Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores.

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7 January 2021

[New system of chromosome banding: the T bands (author's transl)]

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7 January 2021

Recombination and mammalian genome evolution

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7 January 2021

The gene-richest bands of human chromosomes replicate at the onset of the S-phase

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7 January 2021

Correlation between molecular clock ticking, codon usage fidelity of DNA repair, chromosome banding and chromatin compactness in germline cells

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7 January 2021

An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation

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7 January 2021

Isochores result from mutation not selection

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7 January 2021

Digitized and differentially shaded human chromosome ideograms for genomic applications.

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7 January 2021

A boundary of long-range G + C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary.

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7 January 2021

A compositional map of human chromosome 21.

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7 January 2021

Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes

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7 January 2021

Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

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7 January 2021

Higher rates of amino acid substitution in rodents than in humans

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7 January 2021

Secondary structure of MS2 phage RNA and bias in code word usage

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7 January 2021

Warm-blooded isochore structure in Nile crocodile and turtle

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7 January 2021

Global variation in G+C content along vertebrate genome DNA. Possible correlation with chromosome band structures.

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7 January 2021

Giant G+C% mosaic structures of the human genome found by arrangement of GenBank human DNA sequences according to genetic positions.

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7 January 2021

CpG doublets, CpG islands and Alu repeats in long human DNA sequences from different isochore families.

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7 January 2021

Evolutionary changes in CpG and methylation levels in the genome of vertebrates

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7 January 2021

Mapping of DNAase I sensitive regions on mitotic chromosomes

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7 January 2021

Rapid determination of nucleotide content and its application to the study of genome structure

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7 January 2021

A simple method for displaying the hydropathic character of a protein

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7 January 2021

CpG islands as gene markers in the human genome.

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7 January 2021

An approach to the organization of eukaryotic genomes at a macromolecular level

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7 January 2021

Evidence for erosion of mouse CpG islands during mammalian evolution

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7 January 2021

Compositional properties of coding sequences and mammalian phylogeny

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7 January 2021

The distribution of genes in the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2899%2900485-0

7 January 2021

Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions

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https://api.crossref.org/works/10.1016%2FS0378-1119%2899%2900485-0

7 January 2021

Compositional correlations in the chicken genome

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7 January 2021

Hydrophobicity and phylogeny

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7 January 2021

Directional fixation of mutations in vertebrate evolution

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7 January 2021

Isochores and CpG islands in YAC contigs in human Xq26.1-qter

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7 January 2021

The hyperthermophile chromosomal protein Sac7d sharply kinks DNA

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7 January 2021

Evolution of isochores in rodents

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7 January 2021

The regional integration of retroviral sequences into the mosaic genomes of mammals

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7 January 2021

The isochore patterns of mammalian genomes and their phylogenetic implications

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7 January 2021

Identification of the gene-richest bands in human chromosomes

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7 January 2021

The highest gene concentrations in the human genome are in telomeric bands of metaphase chromosomes

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7 January 2021

Correlations between isochores and chromosomal bands in the human genome.

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7 January 2021

Identification of the gene-richest bands in human prometaphase chromosomes.

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7 January 2021

Gene distribution and nucleotide sequence organization in the mouse genome

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7 January 2021

Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC.

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7 January 2021

On the genetic basis of variation and heterogeneity of DNA base composition

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7 January 2021

Directional mutation pressure and neutral molecular evolution

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7 January 2021

Alternative chromatin structure at CpG islands

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7 January 2021

An analysis of eukaryotic genomes by density gradient centrifugation

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7 January 2021

Local stability of DNA and RNA secondary structure and its relation to biological functions

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7 January 2021

Mutation rates differ among regions of the mammalian genome

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7 January 2021

Evidence for higher rates of nucleotide substitution in rodents than in man

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7 January 2021

Gene distribution and nucleotide sequence organization in the human genome

1 reference

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7 January 2021

The gene distribution of the human genome

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https://api.crossref.org/works/10.1016%2FS0378-1119%2899%2900485-0

7 January 2021

Specific compositional patterns of synonymous positions in homologous mammalian genes

1 reference

https://api.crossref.org/works/10.1016%2FS0378-1119%2899%2900485-0

7 January 2021

Compositional bimodality and evolution of retroviral genomes

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7 January 2021

10.1016/S0378-1119(99)00485-0

Identifiers

DOI

1 reference

Consolidated OpenCitations Corpus – April 2017

863719

863719

1 reference

Consolidated OpenCitations Corpus – April 2017

Consolidated OpenCitations Corpus – April 2017

1 reference