Improved molecular replacement by density- and energy-guided protein structure optimization (Q28236567)

4

0 references

Eugene Valkov

7

Eugene Valkov

0 references

Thomas C. Terwilliger

Thomas C Terwilliger

2

0 references

Randy Read

Randy J Read

3

0 references

David Baker

David Baker

15

0 references

Debanu Das

11

Debanu Das

0 references

Frank DiMaio

1

Frank DiMaio

0 references

author name string

Gustav Oberdorfer

5

0 references

Ulrike Wagner

6

0 references

Assaf Alon

8

0 references

Deborah Fass

9

0 references

Sergey M Vorobiev

12

0 references

Hideo Iwaï

13

0 references

P Raj Pokkuluri

NMR structure determination for larger proteins using backbone-only data

14

0 references

language of work or name

English

0 references

publication date

26 May 2011

0 references

published in

Nature

0 references

volume

473

0 references

issue

7348

0 references

page(s)

540-3

0 references

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Crystallographic ab initio protein structure solution below atomic resolution

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Phasercrystallographic software

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

High-resolution structure prediction and the crystallographic phase problem

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Crystallographic R factor refinement by molecular dynamics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

The Buccaneer software for automated model building. 1. Tracing protein chains

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Protein homology detection by HMM-HMM comparison

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Super-resolution biomolecular crystallography with low-resolution data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Macromolecular modeling with rosetta

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

CASP8 results in context of previous experiments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3365536

MOLREP: an Automated Program for Molecular Replacement

29 September 2017

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Crystallographic refinement by knowledge-based exploration of complex energy landscapes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

The importance of alignment accuracy for molecular replacement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

On the potential of normal-mode analysis for solving difficult molecular-replacement problems

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Improved Fourier coefficients for maps using phases from partial structures with errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Completeness in structural genomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Cyclic coordinate descent: A robotics algorithm for protein loop closure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Refinement of protein structures into low-resolution density maps using rosetta

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Prediction of the structure of symmetrical protein assemblies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Refinement of the influenza virus hemagglutinin by simulated annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

Rapid calculation of first and second derivatives of conformational energy with respect to dihedral angles for proteins general recurrent equations

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

inferred from DOI database lookup

7 January 2021

based on heuristic

Comparative protein structure modeling using Modeller

1 reference

https://api.crossref.org/works/10.1038%2FNATURE09964

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE09964

1 reference

Dimensions Publication ID

1002036513

0 references

1 reference

1 reference

PubMed publication ID

21532589

1 reference