Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50% (Q28249248)

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English	Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50%	scientific article

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6 November 2019

Structural probing and mutagenic analysis of the stem-loop required for Escherichia coli dnaX ribosomal frameshifting: programmed efficiency of 50% (English)

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6 November 2019

Escherichia coli

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3

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6 November 2019

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Larsen B

1

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Gesteland RF

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1 August 1997

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6 November 2019

Journal of Molecular Biology

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271

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6 November 2019

1

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6 November 2019

47-60

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6 November 2019

The sequences of and distance between two cis-acting signals determine the efficiency of ribosomal frameshifting in human immunodeficiency virus type 1 and human T-cell leukemia virus type II in vivo

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Pb(II)-catalysed cleavage of the sugar–phosphate backbone of yeast tRNAPhe—implications for lead toxicity and self-splicing RNA

1 reference

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12 December 2020

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rRNA-mRNA base pairing stimulates a programmed -1 ribosomal frameshift

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12 December 2020

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Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

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Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position, and concerted evolution

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Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites

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Chemical probes for higher-order structure in RNA

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Autoregulatory frameshifting in decoding mammalian ornithine decarboxylase antizyme

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Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli

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Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: a model for a possible family of structurally related RNA pseudoknots

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An efficient ribosomal frame-shifting signal in the polymerase-encoding region of the coronavirus IBV.

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E. coli ribosomes re-phase on retroviral frameshift signals at rates ranging from 2 to 50 percent

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https://pubmed.ncbi.nlm.nih.gov/9300054

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Translational control in production of transposase and in transposition of insertion sequence IS3.

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Determining divergence times of the major kingdoms of living organisms with a protein clock

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Reading frame switch caused by base-pair formation between the 3' end of 16S rRNA and the mRNA during elongation of protein synthesis in Escherichia coli

1 reference

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Slippery runs, shifty stops, backward steps, and forward hops: -2, -1, +1, +2, +5, and +6 ribosomal frameshifting

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https://pubmed.ncbi.nlm.nih.gov/9300054

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Identification and analysis of the pseudoknot-containing gag-pro ribosomal frameshift signal of simian retrovirus-1.

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Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal

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Translational frame shifting in theEscherichia colidnaX genein vitro

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In vivo assembly of the tau-complex of the DNA polymerase III holoenzyme expressed from a five-gene artificial operon. Cleavage of the tau-complex to form a mixed gamma-tau-complex by the OmpT protease.

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Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs

1 reference

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Expression of peptide chain release factor 2 requires high-efficiency frameshift.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

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Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal

1 reference

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Translational frameshifting generates the gamma subunit of DNA polymerase III holoenzyme

1 reference

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Programmed translational frameshifting and initiation at an AUU codon in gene expression of bacterial insertion sequence IS911

1 reference

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Recoding: dynamic reprogramming of translation.

1 reference

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1 reference

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1 reference

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Rates of aminoacyl-tRNA selection at 29 sense codons in vivo.

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1 reference

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1 reference

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1 reference

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RNA structure prediction

1 reference

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An RNA pseudoknot and an optimal heptameric shift site are required for highly efficient ribosomal frameshifting on a retroviral messenger RNA

1 reference

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1 reference

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1 reference

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1 reference

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Nucleotide sequence of the Escherichia coli replication gene dnaZX.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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Programmed ribosomal frameshifting generates the Escherichia coli DNA polymerase III gamma subunit from within the tau subunit reading frame

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

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Complete nucleotide sequence of a milk-transmitted mouse mammary tumor virus: two frameshift suppression events are required for translation of gag and pol.

1 reference

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Sequence requirements for efficient translational frameshifting in the Escherichia coli dnaX gene and the role of an unstable interaction between tRNA(Lys) and an AAG lysine codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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Cleavage of tRNA with imidazole and spermine imidazole constructs: a new approach for probing RNA structure

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

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Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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Two efficient ribosomal frameshifting events are required for synthesis of mouse mammary tumor virus gag-related polyproteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

inferred from PubMed ID database lookup

The gamma subunit of DNA polymerase III holoenzyme of Escherichia coli is produced by ribosomal frameshifting

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The human astrovirus RNA-dependent RNA polymerase coding region is expressed by ribosomal frameshifting

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

inferred from PubMed ID database lookup

The Escherichia coli DNA polymerase III holoenzyme contains both products of the dnaX gene, tau and gamma, but only tau is essential.

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

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CUUCGG hairpins: extraordinarily stable RNA secondary structures associated with various biochemical processes

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

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Probing the structure of the Escherichia coli 10Sa RNA (tmRNA).

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

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based on heuristic

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Comparison of the tertiary structure of yeast tRNA(Asp) and tRNA(Phe) in solution. Chemical modification study of the bases

1 reference

https://pubmed.ncbi.nlm.nih.gov/9300054

12 December 2020

based on heuristic

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Identifiers

10.1006/JMBI.1997.1162

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6 November 2019

release_tlbo2qod5rcsrbs3kzp5vueyoq

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24 November 2022

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2 references

Consolidated OpenCitations Corpus – April 2017

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