An analytical pipeline for genomic representations used for cytosine methylation studies (Q28273314)

4

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John Greally

object named as

John M Greally

9

0 references

Kami Kim

object named as

Kami Kim

8

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author name string

Mark Reimers

2

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Batbayar Khulan

3

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Todd A Richmond

5

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Quan Chen

6

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Xin Zheng

The epigenomics of cancer

7

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language of work or name

English

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publication date

1 May 2008

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1 reference

24

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page(s)

1161-7

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issue

9

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Comparative isoschizomer profiling of cytosine methylation: the HELP assay

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Quality assessment of microarrays: visualization of spatial artifacts and quantitation of regional biases

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

The human genome browser at UCSC

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

CpG-rich islands and the function of DNA methylation

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Prevention of pre-PCR mis-priming and primer dimerization improves low-copy-number amplifications

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Spermatogenic cells of the prepuberal mouse. Isolation and morphological characterization

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Bisulfite genomic sequencing of microdissected cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Bias in template-to-product ratios in multitemplate PCR

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

DNA rehybridization during PCR: the 'Cot effect' and its consequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Parental-origin-specific epigenetic modification of the mouse H19 gene

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Cloning the differences between two complex genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Methylation pattern of mouse mitochondrial DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

MspI, an isoschizomer of hpaII which cleaves both unmethylated and methylated hpaII sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Separation of mouse spermatogenic cells by sedimentation velocity. A morphological characterization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Toxoplasma gondii and Cryptosporidium parvum lack detectable DNA cytosine methylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Methylation of mitochondrial DNA is not a useful marker for cancer detection

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Large-scale genotyping of complex DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5061929

Genome-wide profiling of promoter methylation in human

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18353789

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18353789

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Maternal inheritance of the mouse mitochondrial genome is not mediated by a loss or gross alteration of the paternal mitochondrial DNA or by methylation of the oocyte mitochondrial DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18353789

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN096

0 references

DBLP publication ID

journals/bioinformatics/ThompsonRKGRCZKG08

1 reference