Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains (Q28280482)

3

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Cyrus Chothia

6

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Julian Gough

10

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Ian Sillitoe

2

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Federico Minneci

15

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Bernardo Ochoa-Montaño

18

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Jose M Dana

Jose M Dana

8

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Sarah Hunter

Sarah Hunter

11

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Alex Mitchell

Alex Mitchell

16

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Sameer Velankar

Sameer Velankar

22

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Gerard Kleywegt

Gerard J Kleywegt

14

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Corin Yeats

23

Corin Yeats

0 references

Alexey G. Murzin

17

Alexey G Murzin

0 references

Owen Rackham

19

Owen J L Rackham

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Tom Blundell

4

Tom L Blundell

0 references

David Tudor Jones

12

David T Jones

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Alison L Cuff

7

Alison Cuff

0 references

Daniel Buchan

5

Daniel W A Buchan

0 references

Ioannis Filippis

9

Ioannis Filippis

0 references

Lawrence A Kelley

13

Lawrence A Kelley

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Michael Sternberg

21

Michael J E Sternberg

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author name string

Tony E Lewis

1

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James Smith

Creative Commons Attribution-NonCommercial 3.0 Unported

20

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language of work or name

English

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publication date

January 2013

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published in

Nucleic Acids Research

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volume

41

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issue

Database issue

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page(s)

D499-507

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copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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MolProbity: all-atom structure validation for macromolecular crystallography

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Protein structure prediction on the Web: a case study using the Phyre server

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The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

20 March 2017

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SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

20 March 2017

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

20 March 2017

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HOMSTRAD: a database of protein structure alignments for homologous families

20 March 2017

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 March 2017

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Comparative protein modelling by satisfaction of spatial restraints

20 March 2017

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Protein structure alignment

20 March 2017

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Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure

20 March 2017

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Comparative protein structure modeling using Modeller

7 April 2017

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Statistical potential for assessment and prediction of protein structures

7 April 2017

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Hidden Markov models for detecting remote protein homologies

7 April 2017

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Data growth and its impact on the SCOP database: new developments

7 April 2017

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Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre

7 April 2017

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A graph-theory algorithm for rapid protein side-chain prediction

7 April 2017

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Characterization of pathogenic germline mutations in human protein kinases

7 April 2017

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SUPERFAMILY 1.75 including a domain-centric gene ontology method

29 September 2017

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Protein annotation and modelling servers at University College London

29 September 2017

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A fast and automated solution for accurately resolving protein domain architectures.

29 September 2017

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Gene3D: merging structure and function for a Thousand genomes

29 September 2017

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CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

29 September 2017

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Fold assessment for comparative protein structure modeling.

29 September 2017

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Genomic scale sub-family assignment of protein domains

29 September 2017

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Residue-rotamer-reduction algorithm for the protein side-chain conformation problem.

29 September 2017

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Cyclic coordinate descent: A robotics algorithm for protein loop closure.

29 September 2017

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Definition of general topological equivalence in protein structures. A procedure involving comparison of properties and relationships through simulated annealing and dynamic programming

29 September 2017

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Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone.

29 September 2017

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pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination

21 January 2018

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A fast algorithm for the maximum clique problem

21 January 2018

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The evolution and structure prediction of coiled coils across all genomes

21 January 2018

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journals/nar/LewisSABBCCDFGHJKKMMMORSSVYO13

21 January 2018

Identifiers

DOI

10.1093/NAR/GKS1266

0 references

DBLP publication ID

1 reference