Regulation of histone methylation by demethylimination and demethylation (Q28291841)

Nature Reviews Molecular Cell Biology

Europe PubMed Central

title

Regulation of histone methylation by demethylimination and demethylation (English)

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author name string

Robert J Klose

series ordinal

1

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Yi Zhang

series ordinal

2

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language of work or name

English

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publication date

April 2007

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published in

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volume

8

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issue

4

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page(s)

307-18

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cites work

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The many faces of histone lysine methylation

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Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails

31 March 2020

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Histone arginine methylation and its dynamic regulation

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Methylation of histone H4 at arginine 3 facilitating transcriptional activation by nuclear hormone receptor

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Methylation of histone H4 at arginine 3 occurs in vivo and is mediated by the nuclear receptor coactivator PRMT1

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Regulation of transcription by a protein methyltransferase

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The role of protein arginine methylation in the formation of silent chromatin

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Yng1 PHD Finger Binding to H3 Trimethylated at K4 Promotes NuA3 HAT Activity at K14 of H3 and Transcription at a Subset of Targeted ORFs

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Selective recognition of methylated lysine 9 on histone H3 by the HP1 chromo domain

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Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

31 March 2020

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Recognition of histone H3 lysine-4 methylation by the double tudor domain of JMJD2A

31 March 2020

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A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling

31 March 2020

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ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression

31 March 2020

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Proteome-wide analysis in Saccharomyces cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36.

31 March 2020

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Structure and catalytic mechanism of the human histone methyltransferase SET7/9

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The distribution and turnover of labeled methyl groups in histone fractions of cultured mammalian cells

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In vivo methylation and turnover of rat brain histones

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Reversing histone methylation

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Histone methylation: dynamic or static?

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The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

31 March 2020

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Proteolytic processing of histone H3 in chromatin: a physiologically regulated event in Tetrahymena micronuclei

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Dynamic changes in histone H3 Lys 9 methylation occurring at tightly regulated inducible inflammatory genes

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Relationship between methylation and acetylation of arginine-rich histones in cycling and arrested HeLa cells

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Nuclear localization of peptidylarginine deiminase V and histone deimination in granulocytes

31 March 2020

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Deimination of arginine residues in nucleophosmin/B23 and histones in HL-60 granulocytes

31 March 2020

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Histone deimination antagonizes arginine methylation

31 March 2020

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Human PAD4 regulates histone arginine methylation levels via demethylimination

31 March 2020

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Kinetic characterization of protein arginine deiminase 4: a transcriptional corepressor implicated in the onset and progression of rheumatoid arthritis

31 March 2020

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Structural basis for Ca(2+)-induced activation of human PAD4

31 March 2020

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Regulation of coactivator complex assembly and function by protein arginine methylation and demethylimination

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Enzymatic demethylation of calf thymus histones

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31 March 2020

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A candidate X-linked mental retardation gene is a component of a new family of histone deacetylase-containing complexes

31 March 2020

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Stable histone deacetylase complexes distinguished by the presence of SANT domain proteins CoREST/kiaa0071 and Mta-L1

31 March 2020

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Functional interplay between histone demethylase and deacetylase enzymes

31 March 2020

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An essential role for CoREST in nucleosomal histone 3 lysine 4 demethylation

31 March 2020

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Coordinated histone modifications mediated by a CtBP co-repressor complex

31 March 2020

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Chromatin deacetylation by an ATP-dependent nucleosome remodelling complex

31 March 2020

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CoREST is an integral component of the CoREST- human histone deacetylase complex

31 March 2020

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Histone demethylation mediated by the nuclear amine oxidase homolog LSD1

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Regulation of LSD1 histone demethylase activity by its associated factors

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Crystal structure of human histone lysine-specific demethylase 1 (LSD1).

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Human histone demethylase LSD1 reads the histone code

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Regulation of neuronal traits by a novel transcriptional complex

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LSD1 demethylates repressive histone marks to promote androgen-receptor-dependent transcription

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JHDM2A, a JmjC-containing H3K9 demethylase, facilitates transcription activation by androgen receptor

31 March 2020

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Suppressors of the egg-laying defective phenotype of sel-12 presenilin mutants implicate the CoREST corepressor complex in LIN-12/Notch signaling in C. elegans

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Loss of spr-5 bypasses the requirement for the C.elegans presenilin sel-12 by derepressing hop-1.

31 March 2020

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A conserved role but different partners for the transcriptional corepressor CoREST in fly and mammalian nervous system formation.

31 March 2020

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Fission yeast homologs of human histone H3 lysine 4 demethylase regulate a common set of genes with diverse functions

31 March 2020

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Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage

31 March 2020

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AlkB-mediated oxidative demethylation reverses DNA damage in Escherichia coli

31 March 2020

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Methylation: lost in hydroxylation?

31 March 2020

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Histone demethylation by a family of JmjC domain-containing proteins

31 March 2020

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JmjC-domain-containing proteins and histone demethylation

31 March 2020

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Polycomb group and SCF ubiquitin ligases are found in a novel BCOR complex that is recruited to BCL6 targets

31 March 2020

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Phosphorylation of RNA polymerase II CTD regulates H3 methylation in yeast

31 March 2020

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Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

31 March 2020

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The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

31 March 2020

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Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation

31 March 2020

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The histone 3 lysine 36 methyltransferase, SET2, is involved in transcriptional elongation

31 March 2020

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Identification and characterization of a novel human histone H3 lysine 36-specific methyltransferase

31 March 2020

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Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex

31 March 2020

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Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription

31 March 2020

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Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation

31 March 2020

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Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF

31 March 2020

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Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2

31 March 2020

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Active genes are tri-methylated at K4 of histone H3

31 March 2020

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Genome-wide map of nucleosome acetylation and methylation in yeast

31 March 2020

1 reference

Spatial distribution of di- and tri-methyl lysine 36 of histone H3 at active genes

31 March 2020

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The transcriptional repressor JHDM3A demethylates trimethyl histone H3 lysine 9 and lysine 36.

31 March 2020

1 reference

The putative oncogene GASC1 demethylates tri- and dimethylated lysine 9 on histone H3

31 March 2020

1 reference

Reversal of histone lysine trimethylation by the JMJD2 family of histone demethylases

31 March 2020

1 reference

Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells

31 March 2020

1 reference

JMJD2A is a novel N-CoR-interacting protein and is involved in repression of the human transcription factor achaete scute-like homologue 2 (ASCL2/Hash2)

31 March 2020

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Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

31 March 2020

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Profile of histone lysine methylation across transcribed mammalian chromatin

31 March 2020

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A novel gene (PLU-1) containing highly conserved putative DNA/chromatin binding motifs is specifically up-regulated in breast cancer

31 March 2020

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Mutations in the JARID1C gene, which is involved in transcriptional regulation and chromatin remodeling, cause X-linked mental retardation

31 March 2020

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Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins

31 March 2020

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Structural insights into histone demethylation by JMJD2 family members.

31 March 2020

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Role of histone H3 lysine 27 methylation in Polycomb-group silencing

31 March 2020

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Histone methyltransferase activity of a Drosophila Polycomb group repressor complex

31 March 2020

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Histone methyltransferase activity associated with a human multiprotein complex containing the Enhancer of Zeste protein

31 March 2020

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Drosophila enhancer of Zeste/ESC complexes have a histone H3 methyltransferase activity that marks chromosomal Polycomb sites

31 March 2020

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Polycomb complexes repress developmental regulators in murine embryonic stem cells

31 March 2020

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Knockdown of ALR (MLL2) reveals ALR target genes and leads to alterations in cell adhesion and growth

31 March 2020

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The histone methyltransferases Trithorax and Ash1 prevent transcriptional silencing by Polycomb group proteins

31 March 2020

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Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins

31 March 2020

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Altered nucleosome occupancy and histone H3K4 methylation in response to 'transcriptional stress'.

31 March 2020

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Heterochromatin formation involves changes in histone modifications over multiple cell generations

31 March 2020

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Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription

31 March 2020

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Dot1p modulates silencing in yeast by methylation of the nucleosome core

31 March 2020

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Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation

31 March 2020

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A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin

31 March 2020

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Heterochromatin and tri-methylated lysine 20 of histone H4 in animals

31 March 2020

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A trans-tail histone code defined by monomethylated H4 Lys-20 and H3 Lys-9 demarcates distinct regions of silent chromatin.

31 March 2020

1 reference

Evolution of functional diversity in the cupin superfamily.

31 March 2020

1 reference

JmjC: cupin metalloenzyme-like domains in jumonji, hairless and phospholipase A2β

31 March 2020

1 reference

A second catalytic domain in the Elp3 histone acetyltransferases: a candidate for histone demethylase activity?

31 March 2020

1 reference

The Elongator subunit Elp3 contains a Fe4S4 cluster and binds S-adenosylmethionine

31 March 2020

1 reference

S-adenosylmethionine radical enzymes

31 March 2020

1 reference

Mutations in PHF8 are associated with X linked mental retardation and cleft lip/cleft palate

31 March 2020

1 reference

Rheostat control of gene expression by metabolites

31 March 2020

1 reference

Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase

31 March 2020

1 reference

The silencing protein SIR2 and its homologs are NAD-dependent protein deacetylases

31 March 2020

1 reference

Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose

31 March 2020

1 reference

Control of developmental regulators by Polycomb in human embryonic stem cells

31 March 2020

1 reference

Histone arginine methylation regulates pluripotency in the early mouse embryo

31 March 2020

1 reference

Histone H3-K9 methyltransferase ESET is essential for early development

31 March 2020

1 reference

G9a histone methyltransferase plays a dominant role in euchromatic histone H3 lysine 9 methylation and is essential for early embryogenesis

31 March 2020

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The polycomb-group gene Ezh2 is required for early mouse development

31 March 2020

1 reference

Inhibitors and inactivators of protein arginine deiminase 4: functional and structural characterization.

31 March 2020

1 reference

Inactivation of two diverse enzymes in the amidinotransferase superfamily by 2-chloroacetamidine: dimethylargininase and peptidylarginine deiminase

31 March 2020

1 reference

Histone H3 lysine 4 demethylation is a target of nonselective antidepressive medications

31 March 2020

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A mechanism-based inactivator for histone demethylase LSD1.

31 March 2020

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A highly specific mechanism of histone H3-K4 recognition by histone demethylase LSD1.

31 March 2020

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Tudor, MBT and chromo domains gauge the degree of lysine methylation

31 March 2020

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Yeast Jhd2p is a histone H3 Lys4 trimethyl demethylase

1 reference