Murlet: a practical multiple alignment tool for structural RNA sequences (Q28299498)

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

ProbCons: Probabilistic consistency-based multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

CONTRAfold: RNA secondary structure prediction without physics-based models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

The DNA sequence and analysis of human chromosome 13

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

A benchmark of multiple sequence alignment programs upon structural RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Finding the most significant common sequence and structure motifs in a set of RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Rfam: an RNA family database

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Pure multiple RNA secondary structure alignments: a progressive profile approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Vienna RNA secondary structure server

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Secondary structure prediction for aligned RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Alignment of RNA base pairing probability matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Accelerated probabilistic inference of RNA structure evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Dynamic programming alignment accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Pfold: RNA secondary structure prediction using stochastic context-free grammars

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Dynalign: an algorithm for finding the secondary structure common to two RNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

A reliable sequence alignment method based on probabilities of residue correspondences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Identification and classification of conserved RNA secondary structures in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Noncoding RNA gene detection using comparative sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM146

10.1093/BIOINFORMATICS/BTM146

21 January 2018

Identifiers

DOI

0 references

DBLP publication ID

journals/bioinformatics/KiryuTKA07

1 reference

DBLP Dataset 2021-01-02