Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals (Q28299787)

5

object named as

Myrna M Weissman

0 references

Sara Mostafavi

2

object named as

Sara Mostafavi

0 references

author name string

Alexis Battle

1

0 references

Xiaowei Zhu

3

0 references

James B Potash

4

0 references

Courtney McCormick

6

0 references

Christian D Haudenschild

7

0 references

Kenneth B Beckman

8

0 references

Jianxin Shi

9

0 references

Rui Mei

10

0 references

Alexander E Urban

11

0 references

Stephen B Montgomery

12

0 references

Douglas F Levinson

An integrated encyclopedia of DNA elements in the human genome

13

0 references

language of work or name

English

0 references

publication date

January 2014

0 references

published in

Genome Research

0 references

volume

24

0 references

page(s)

14-24

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issue

1

0 references

cites work

1 reference

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

20 March 2017

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Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk

20 March 2017

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

20 March 2017

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The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants

20 March 2017

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

20 March 2017

1 reference

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Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

20 March 2017

1 reference

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TopHat: discovering splice junctions with RNA-Seq

20 March 2017

1 reference

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Learning a prior on regulatory potential from eQTL data

20 March 2017

1 reference

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EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

20 March 2017

1 reference

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Alternative isoform regulation in human tissue transcriptomes

20 March 2017

1 reference

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Revealing the architecture of gene regulation: the promise of eQTL studies

20 March 2017

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

20 March 2017

1 reference

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Effect of variation in CHI3L1 on serum YKL-40 level, risk of asthma, and lung function

20 March 2017

1 reference

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MINT: the Molecular INTeraction database

20 March 2017

1 reference

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Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation

20 March 2017

1 reference

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A non-random walk through the genome

20 March 2017

1 reference

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Scanning Human Gene Deserts for Long-Range Enhancers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

The GRID: the General Repository for Interaction Datasets

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Exon-specific QTLs skew the inferred distribution of expression QTLs detected using gene expression array data

20 March 2017

1 reference

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The IntAct molecular interaction database in 2010

20 March 2017

1 reference

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Common variants at MS4A4/MS4A6E, CD2AP, CD33 and EPHA1 are associated with late-onset Alzheimer's disease

20 March 2017

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

20 March 2017

1 reference

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Annotation of functional variation in personal genomes using RegulomeDB

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Understanding mechanisms underlying human gene expression variation with RNA sequencing

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Transcriptome genetics using second generation sequencing in a Caucasian population

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Common regulatory variation impacts gene expression in a cell type-dependent manner

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Common and rare variants in multifactorial susceptibility to common diseases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Genetics of gene expression and its effect on disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Relative impact of nucleotide and copy number variation on gene expression phenotypes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

An integrative genomics approach to infer causal associations between gene expression and disease

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Architecture of the human regulatory network derived from ENCODE data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Evolutionary rate in the protein interaction network

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Linking disease associations with regulatory information in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Mapping cis- and trans-regulatory effects across multiple tissues in twins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Patterns of cis regulatory variation in diverse human populations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Genetics of gene expression in primary immune cells identifies cell type-specific master regulators and roles of HLA alleles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

DNase I sensitivity QTLs are a major determinant of human expression variation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Dissecting the regulatory architecture of gene expression QTLs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

New gene functions in megakaryopoiesis and platelet formation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Estimation of alternative splicing variability in human populations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

A genome-wide comparison of the functional properties of rare and common genetic variants in humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Improving RNA-Seq expression estimates by correcting for fragment bias

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Polymorphic cis- and trans-regulation of human gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

PML-RARalpha/RXR Alters the Epigenetic Landscape in Acute Promyelocytic Leukemia.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Global patterns of cis variation in human cells revealed by high-density allelic expression analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Digital RNA allelotyping reveals tissue-specific and allele-specific gene expression in human

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

BioMart Central Portal--unified access to biological data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Common polymorphic transcript variation in human disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Deletion of IKZF1 and prognosis in acute lymphoblastic leukemia

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Targeted screening of cis-regulatory variation in human haplotypes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Long-range control of gene expression: emerging mechanisms and disruption in disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Cis-acting regulatory variation in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Clustering of housekeeping genes provides a unified model of gene order in the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Genome-wide analysis of transcript isoform variation in humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Allelic Variation in Human Gene Expression

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3875855

Long-range intrachromosomal interactions in the T helper type 2 cytokine locus

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24092820

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Conservation and coevolution in the scale-free human gene coexpression network

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24092820

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24092820

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.155192.113

1 reference

868063

868063

1 reference

1 reference

1 reference