An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3. (Q28486509)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

title

An RNA-seq method for defining endoribonuclease cleavage specificity identifies dual rRNA substrates for toxin MazF-mt3 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

1 reference

Ming Ouyang

4

1 reference

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13 March 2020

Jason M Schifano

series ordinal

1

1 reference

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13 March 2020

Irina O Vvedenskaya

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

Jared G Knoblauch

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

language of work or name

English

0 references

publication date

8 April 2014

1 reference

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13 March 2020

published in

Nature Communications

1 reference

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13 March 2020

volume

5

1 reference

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13 March 2020

page(s)

3538

1 reference

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Mycobacterial toxin MazF-mt6 inhibits translation through cleavage of 23S rRNA at the ribosomal A site

13 March 2020

cites work

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Mycobacterium smegmatis RNase J is a 5'-3' exo-/endoribonuclease and both RNase J and RNase E are involved in ribosomal RNA maturation

19 March 2017

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Noncognate Mycobacterium tuberculosis Toxin-Antitoxins Can Physically and Functionally Interact

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

19 March 2017

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The mRNA interferases, MazF-mt3 and MazF-mt7 from Mycobacterium tuberculosis target unique pentad sequences in single-stranded RNA

19 March 2017

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Characterization of mRNA interferases from Mycobacterium tuberculosis

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Kid cleaves specific mRNAs at UUACU sites to rescue the copy number of plasmid R1

19 March 2017

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Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications

19 March 2017

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19 March 2017

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The senX3-regX3 two-component regulatory system of Mycobacterium tuberculosis is required for virulence

19 March 2017

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Structural basis of the ribosomal machinery for peptide bond formation, translocation, and nascent chain progression

19 March 2017

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Crystal structure of the ribosome at 5.5 A resolution

19 March 2017

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Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

19 March 2017

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An Escherichia coli chromosomal "addiction module" regulated by guanosine [corrected] 3',5'-bispyrophosphate: a model for programmed bacterial cell death

19 March 2017

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Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

19 March 2017

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Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis

19 March 2017

1 reference

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Characterization of a mazEF toxin-antitoxin homologue from Staphylococcus equorum

29 September 2017

1 reference

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Bacterial persistence and toxin-antitoxin loci

29 September 2017

1 reference

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Clostridium difficile MazF toxin exhibits selective, not global, mRNA cleavage

29 September 2017

1 reference

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Broad-specificity mRNA-rRNA complementarity in efficient protein translation.

29 September 2017

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Growth and translation inhibition through sequence-specific RNA binding by Mycobacterium tuberculosis VapC toxin

29 September 2017

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Bacillus subtilis MazF-bs (EndoA) is a UACAU-specific mRNA interferase

29 September 2017

1 reference

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Letting sleeping dos lie: does dormancy play a role in tuberculosis?

29 September 2017

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Escherichia coli MazF leads to the simultaneous selective synthesis of both "death proteins" and "survival proteins".

29 September 2017

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MazF, an mRNA interferase, mediates programmed cell death during multicellular Myxococcus development

29 September 2017

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A unified view of the initiation of protein synthesis

29 September 2017

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Characterization of ChpBK, an mRNA interferase from Escherichia coli

29 September 2017

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Characterization of the tRNA and ribosome-dependent pppGpp-synthesis by recombinant stringent factor from Escherichia coli

29 September 2017

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X-ray crystallography study on ribosome recycling: the mechanism of binding and action of RRF on the 50S ribosomal subunit

29 September 2017

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MazF-mediated cell death in Escherichia coli: a point of no return

29 September 2017

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Interference of mRNA function by sequence-specific endoribonuclease PemK.

29 September 2017

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MazF Cleaves Cellular mRNAs Specifically at ACA to Block Protein Synthesis in Escherichia coli

29 September 2017

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Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA.

29 September 2017

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Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv

29 September 2017

1 reference

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Tailing and 3'-end labeling of RNA with yeast poly(A) polymerase and various nucleotides

29 September 2017

1 reference

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Growth phase-dependent control of transcription start site selection and gene expression by nanoRNAs.

29 September 2017

1 reference

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Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

NanoRNAs prime transcription initiation in vivo

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Significant bias against the ACA triplet in the tmRNA sequence of Escherichia coli K-12.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Characterization of MazFSa, an endoribonuclease from Staphylococcus aureus

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Model for RNA binding and the catalytic site of the RNase Kid of the bacterial parD toxin-antitoxin system.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

The anti-Shine-Dalgarno region in Escherichia coli 16S ribosomal RNA is not essential for the correct selection of translational starts

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Inhibition of specific gene expressions by protein-mediated mRNA interference.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

TubercuList--10 years after

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Staphylococcus aureus MazF specifically cleaves a pentad sequence, UACAU, which is unusually abundant in the mRNA for pathogenic adhesive factor SraP.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage

27 November 2018

1 reference

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Overexpression of MazFsa in Staphylococcus aureus induces bacteriostasis by selectively targeting mRNAs for cleavage

27 November 2018

1 reference

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The Bacillus subtilis ydcDE operon encodes an endoribonuclease of the MazF/PemK family and its inhibitor.

27 November 2018

1 reference

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Single protein production in living cells facilitated by an mRNA interferase.

27 November 2018

1 reference

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Insights into the specificity of RNA cleavage by the Escherichia coli MazF toxin

27 November 2018

1 reference

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Rapid induction and reversal of a bacteriostatic condition by controlled expression of toxins and antitoxins.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4090939

Insights into the mRNA cleavage mechanism by MazF, an mRNA interferase

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24709835

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NCOMMS4538

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

13 March 2020

ADS bibcode

2014NatCo...5.3538S

0 references

1015906771

0 references

OpenCitations bibliographic resource ID

1039573

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1039573

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

PubMed publication ID

24709835

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24709835%20AND%20SRC:MED&resulttype=core&format=json