Extremely High Mutation Rate of HIV-1 In Vivo (Q28548089)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26375597%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Extremely High Mutation Rate of HIV-1 In Vivo (English)

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24 February 2020

1

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24 February 2020

Ron Geller

2

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24 February 2020

author name string

Raquel Garijo

3

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24 February 2020

José López-Aldeguer

4

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24 February 2020

Rafael Sanjuán

5

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24 February 2020

language of work or name

English

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publication date

16 September 2015

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24 February 2020

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24 February 2020

volume

13

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24 February 2020

issue

9

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24 February 2020

page(s)

e1002251

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Creative Commons Attribution 4.0 International

24 February 2020

copyright license

start time

16 September 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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19 March 2017

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19 March 2017

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Arbovirus high fidelity variant loses fitness in mosquitoes and mice

19 March 2017

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Genetic editing of herpes simplex virus 1 and Epstein-Barr herpesvirus genomes by human APOBEC3 cytidine deaminases in culture and in vivo

19 March 2017

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APOBEC3G contributes to HIV-1 variation through sublethal mutagenesis

19 March 2017

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Effect of Ribavirin on the Mutation Rate and Spectrum of Hepatitis C Virus In Vivo

19 March 2017

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19 March 2017

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A-to-G hypermutation in the genome of lymphocytic choriomeningitis virus

19 March 2017

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Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice

19 March 2017

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19 March 2017

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Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

7 April 2017

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Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection

7 April 2017

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Prognosis in HIV-1 infection predicted by the quantity of virus in plasma

7 April 2017

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Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase

7 April 2017

1 reference

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Requirement of HIV-1 Vif C-terminus for Vif-CBF-β interaction and assembly of CUL5-containing E3 ligase

7 April 2017

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Uneven genetic robustness of HIV-1 integrase

29 September 2017

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RNA virus population diversity, an optimum for maximal fitness and virulence

29 September 2017

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Positioning of APOBEC3G/F mutational hotspots in the human immunodeficiency virus genome favors reduced recognition by CD8+ T cells

29 September 2017

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Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective

29 September 2017

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Attenuation of human enterovirus 71 high-replication-fidelity variants in AG129 mice

29 September 2017

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MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

29 September 2017

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Host Factors and HIV-1 Replication: Clinical Evidence and Potential Therapeutic Approaches

29 September 2017

1 reference

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Extreme genetic fragility of the HIV-1 capsid.

29 September 2017

1 reference

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Elevated hypermutation levels in HIV-1 natural viral suppressors

29 September 2017

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The role of mutational robustness in RNA virus evolution

29 September 2017

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Variation of HIV-1 mutation spectra among cell types

29 September 2017

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De novo assembly of highly diverse viral populations

29 September 2017

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Quantifying the diversification of hepatitis C virus (HCV) during primary infection: estimates of the in vivo mutation rate

29 September 2017

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The origin of genetic diversity in HIV-1.

29 September 2017

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APOBEC3G expression and hypermutation are inversely associated with human immunodeficiency virus type 1 (HIV-1) burden in vivo

29 September 2017

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APOBEC3G-induced hypermutation of human immunodeficiency virus type-1 is typically a discrete "all or nothing" phenomenon

29 September 2017

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

29 September 2017

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The activity spectrum of Vif from multiple HIV-1 subtypes against APOBEC3G, APOBEC3F, and APOBEC3H

29 September 2017

1 reference

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Mutation rates and intrinsic fidelity of retroviral reverse transcriptases.

29 September 2017

1 reference

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Expression of APOBEC3G/3F and G-to-A hypermutation levels in HIV-1-infected children with different profiles of disease progression

29 September 2017

1 reference

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Analysis of human APOBEC3H haplotypes and anti-human immunodeficiency virus type 1 activity

29 September 2017

1 reference

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Identifying genetic markers of adaptation for surveillance of viral host jumps

29 September 2017

1 reference

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Nature, position, and frequency of mutations made in a single cycle of HIV-1 replication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Understanding HIV-1 latency provides clues for the eradication of long-term reservoirs

29 September 2017

1 reference

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Analysis of the percentage of human immunodeficiency virus type 1 sequences that are hypermutated and markers of disease progression in a longitudinal cohort, including one individual with a partially defective Vif

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

T-cell vaccine strategies for human immunodeficiency virus, the virus with a thousand faces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

APOBEC3G induces a hypermutation gradient: purifying selection at multiple steps during HIV-1 replication results in levels of G-to-A mutations that are high in DNA, intermediate in cellular viral RNA, and low in virion RNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Relationship between HIV coreceptor tropism and disease progression in persons with untreated chronic HIV infection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

The level of APOBEC3G (hA3G)-related G-to-A mutations does not correlate with viral load in HIV type 1-infected individuals

29 September 2017

1 reference

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Conserved footprints of APOBEC3G on Hypermutated human immunodeficiency virus type 1 and human endogenous retrovirus HERV-K(HML2) sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Inversing the natural hydrogen bonding rule to selectively amplify GC-rich ADAR-edited RNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Evidence for editing of human papillomavirus DNA by APOBEC3 in benign and precancerous lesions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing

29 September 2017

1 reference

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Predictors of disease progression in HIV infection: a review

29 September 2017

1 reference

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Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Single-molecule PCR: an artifact-free PCR approach for the analysis of somatic mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Extensive editing of both hepatitis B virus DNA strands by APOBEC3 cytidine deaminases in vitro and in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

G-->A hypermutation in protease and reverse transcriptase regions of human immunodeficiency virus type 1 residing in resting CD4+ T cells in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Influence of reverse transcriptase variants, drugs, and Vpr on human immunodeficiency virus type 1 mutant frequencies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Modelling viral and immune system dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Deoxyribonucleoside triphosphate pool imbalances in vivo are associated with an increased retroviral mutation rate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Replication-competent noninduced proviruses in the latent reservoir increase barrier to HIV-1 cure.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

HIV-1 Vif adaptation to human APOBEC3H haplotypes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Correlation between mutation rate and genome size in riboviruses: mutation rate of bacteriophage Qβ.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Biased hypermutation and other genetic changes in defective measles viruses in human brain infections

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Numerous transitions in human parainfluenza virus 3 RNA recovered from persistently infected cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Fidelity of HIV-1 reverse transcriptase copying RNA in vitro

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

The accuracy of reverse transcriptase from HIV-1.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574155

Extremely high mutation rate of a hammerhead viroid

20 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

End-point limiting-dilution real-time PCR assay for evaluation of hepatitis C virus quasispecies in serum: performance under optimal and suboptimal conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

Variable contexts and levels of hypermutation in HIV-1 proviral genomes recovered from primary peripheral blood mononuclear cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

Engineering attenuated virus vaccines by controlling replication fidelity

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

Measurement and modeling of human T cell kinetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

Dynamics of total, linear nonintegrated, and integrated HIV-1 DNA in vivo and in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

Integrated HIV DNA accumulates prior to treatment while episomal HIV DNA records ongoing transmission afterwards.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

E138K and M184I mutations in HIV-1 reverse transcriptase coemerge as a result of APOBEC3 editing in the absence of drug exposure

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

A model for the generation of multiple A to G transitions in the human respiratory syncytial virus genome: predicted RNA secondary structures as substrates for adenosine deaminases that act on RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

A combination of defective DNA and protective host factors are found in a set of HIV-1 ancestral LTNPs

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.1002251

Retrovirus mutation rates and their role in genetic variation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26375597

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HIV tropism: diagnostic tools and implications for disease progression and treatment with entry inhibitors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26375597

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rates of HIV immune escape and reversion: implications for vaccination

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26375597

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.1002251

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26375597%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26375597%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

26375597

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26375597%20AND%20SRC:MED&resulttype=core&format=json