Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals (Q28602397)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

title

Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

main subject

pathogen transmission

0 references

author

William Diehl

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Welkin E Johnson

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

author name string

Nirali Patel

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

Kate Halm

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

language of work or name

English

0 references

publication date

8 March 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

volume

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

page(s)

e12704

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

Biochemical characterization of novel retroviral integrase proteins

10 March 2020

cites work

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17 March 2017

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17 March 2017

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17 March 2017

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Gain-of-Sensitivity Mutations in a Trim5-Resistant Primary Isolate of Pathogenic SIV Identify Two Independent Conserved Determinants of Trim5α Specificity

17 March 2017

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p12 tethers the murine leukemia virus pre-integration complex to mitotic chromosomes

17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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17 March 2017

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Evolution of a TRIM5-CypA splice isoform in old world monkeys

17 March 2017

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Independent evolution of an antiviral TRIMCyp in rhesus macaques

17 March 2017

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The delayed rise of present-day mammals

17 March 2017

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17 March 2017

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Interaction of Moloney murine leukemia virus matrix protein with IQGAP

17 March 2017

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Genome sequence, comparative analysis and haplotype structure of the domestic dog

17 March 2017

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Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy

17 March 2017

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Ancient co-speciation of simian foamy viruses and primates

17 March 2017

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

17 March 2017

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Initial sequencing and comparative analysis of the mouse genome

17 March 2017

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17 March 2017

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17 March 2017

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Structure and self-association of the Rous sarcoma virus capsid protein

17 March 2017

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An assembly domain of the Rous sarcoma virus Gag protein required late in budding

17 March 2017

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Genetics of endogenous murine leukemia viruses

17 March 2017

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Effect of mutations affecting the p6 gag protein on human immunodeficiency virus particle release

17 March 2017

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An improved general amino acid replacement matrix

17 March 2017

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7 April 2017

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7 April 2017

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Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1

7 April 2017

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7 April 2017

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Pan-vertebrate comparative genomics unmasks retrovirus macroevolution

9 May 2017

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MxB binds to the HIV-1 core and prevents the uncoating process of HIV-1

29 September 2017

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The role of viral evolution in rabies host shifts and emergence

29 September 2017

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Broad-scale phylogenomics provides insights into retrovirus-host evolution

29 September 2017

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Extreme genetic fragility of the HIV-1 capsid.

29 September 2017

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The gammaretroviral p12 protein has multiple domains that function during the early stages of replication

29 September 2017

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Env-less endogenous retroviruses are genomic superspreaders

29 September 2017

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Recombinant origin of the retrovirus XMRV.

29 September 2017

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The first sequenced carnivore genome shows complex host-endogenous retrovirus relationships

29 September 2017

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Fidelity of target site duplication and sequence preference during integration of xenotropic murine leukemia virus-related virus

29 September 2017

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Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content

29 September 2017

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The centromere-drive hypothesis: a simple basis for centromere complexity

29 September 2017

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Independent genesis of chimeric TRIM5-cyclophilin proteins in two primate species

29 September 2017

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TRIMCyp expression in Old World primates Macaca nemestrina and Macaca fascicularis

29 September 2017

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Transspecies transmissions of retroviruses: new cases

29 September 2017

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Mutational analysis of the N-terminal domain of Moloney murine leukemia virus capsid protein

29 September 2017

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Human T-cell leukemia virus type 1 integration target sites in the human genome: comparison with those of other retroviruses

29 September 2017

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Tsg101 and Alix interact with murine leukemia virus Gag and cooperate with Nedd4 ubiquitin ligases during budding

29 September 2017

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Symmetrical base preferences surrounding HIV-1, avian sarcoma/leukosis virus, and murine leukemia virus integration sites

29 September 2017

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29 September 2017

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High-resolution structure of a retroviral capsid hexameric amino-terminal domain

29 September 2017

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29 September 2017

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Characterization of the low-copy HERV-Fc family: evidence for recent integrations in primates of elements with coding envelope genes.

29 September 2017

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Functional Surfaces of the Human Immunodeficiency Virus Type 1 Capsid Protein

29 September 2017

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Identification, phylogeny, and evolution of retroviral elements based on their envelope genes

29 September 2017

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Mutations altering the moloney murine leukemia virus p12 Gag protein affect virion production and early events of the virus life cycle

29 September 2017

1 reference

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Constructing primate phylogenies from ancient retrovirus sequences

29 September 2017

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A proline-rich motif (PPPY) in the Gag polyprotein of Mason-Pfizer monkey virus plays a maturation-independent role in virion release

29 September 2017

1 reference

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Packaging of endogenous retroviral sequences in retroviral vectors produced by murine and human packaging cells

29 September 2017

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A replication-competent retrovirus arising from a split-function packaging cell line was generated by recombination events between the vector, one of the packaging constructs, and endogenous retroviral sequences

29 September 2017

1 reference

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Mutagenesis analysis of the murine leukemia virus matrix protein: identification of regions important for membrane localization and intracellular transport

29 September 2017

1 reference

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Single amino acid changes in the murine leukemia virus capsid protein gene define the target of Fv1 resistance

29 September 2017

1 reference

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Mutations in the N-terminal region of human immunodeficiency virus type 1 matrix protein block intracellular transport of the Gag precursor

29 September 2017

1 reference

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Two defective forms of reverse transcriptase can complement to restore retroviral infectivity

29 September 2017

1 reference

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Myristyl amino-terminal acylation of murine retrovirus proteins: An unusual post-translational protein modification

29 September 2017

1 reference

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Physical mapping of the Fv-1 tropism host range determinant of BALB/c murine leukemia viruses

29 September 2017

1 reference

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In vivo modification of retroviral gag gene-encoded polyproteins by myristic acid

29 September 2017

1 reference

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No apparent nucleotide sequence specificity in cellular DNA juxtaposed to retrovirus proviruses

29 September 2017

1 reference

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Myristylation site in Pr65gag is essential for virus particle formation by Moloney murine leukemia virus

29 September 2017

1 reference

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Biochemical and immunological analysis of human immunodeficiency virus gag gene products p17 and p24.

29 September 2017

1 reference

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Automatic generation of primary sequence patterns from sets of related protein sequences

29 September 2017

1 reference

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Generation of diversity in retroviruses

29 September 2017

1 reference

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Amino acid substitutions within the matrix protein of type D retroviruses affect assembly, transport and membrane association of a capsid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798954

Extended x-ray absorption fine structure studies of a retrovirus: equine infectious anemia virus cysteine arrays are coordinated to zinc

29 September 2017

1 reference

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The interferon-inducible MxB protein inhibits HIV-1 infection.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798954

Complement component C4 gene intron 9 as a phylogenetic marker for primates: long terminal repeats of the endogenous retrovirus ERV-K(C4) are a molecular clock of evolution

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798954

Nucleotide sequence of Moloney murine leukaemia virus

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798954

The evolutionary genetics of viral emergence

3 June 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

Macroevolution of complex retroviruses

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

A novel fusion gene, TRIM5-Cyclophilin A in the pig-tailed macaque determines its susceptibility to HIV-1 infection

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

Retroviral matrix domains share electrostatic homology: models for membrane binding function throughout the viral life cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

Evolutionary and biogeographic history of weasel-like carnivorans (Musteloidea).

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

Does a tree-like phylogeny only exist at the tips in the prokaryotes?

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.7554%2FELIFE.12704

Myristylation of gag protein in human T-cell leukemia virus type-I and type-II.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4798954

Structure of the amino-terminal core domain of the HIV-1 capsid protein

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26952212

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Preferential host switching by primate lentiviruses can account for phylogenetic similarity with the primate phylogeny

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26952212

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.12704

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26952212%20AND%20SRC:MED&resulttype=core&format=json

10 March 2020

PubMed publication ID

26952212

1 reference