piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals (Q28607503)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26283688%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

title

piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals (English)

1 reference

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22 February 2020

1

1 reference

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22 February 2020

Yuka W Iwasaki

4

1 reference

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22 February 2020

Jinchuan Xing

6

1 reference

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22 February 2020

Haruhiko Siomi

10

1 reference

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22 February 2020

author name string

Kan Fujino

2

1 reference

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22 February 2020

Yusuke Shiromoto

3

1 reference

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22 February 2020

Hongseok Ha

5

1 reference

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22 February 2020

Akiko Makino

7

1 reference

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22 February 2020

Satomi Kuramochi-Miyagawa

8

1 reference

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22 February 2020

Toru Nakano

9

1 reference

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22 February 2020

Tomoyuki Honda

11

1 reference

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22 February 2020

Keizo Tomonaga

12

1 reference

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22 February 2020

language of work or name

English

0 references

publication date

17 August 2015

1 reference

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22 February 2020

1 reference

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22 February 2020

volume

21

1 reference

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22 February 2020

issue

10

1 reference

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22 February 2020

page(s)

1691-1703

1 reference

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The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing

22 February 2020

cites work

1 reference

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Characterization of human pseudogene-derived non-coding RNAs for functional potential

17 March 2017

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Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division

17 March 2017

1 reference

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Comprehensive analysis of endogenous bornavirus-like elements in eukaryote genomes

17 March 2017

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Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines

17 March 2017

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GENCODE: the reference human genome annotation for The ENCODE Project

17 March 2017

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Transgenerational inheritance of an acquired small RNA-based antiviral response in C. elegans

17 March 2017

1 reference

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Widespread horizontal gene transfer from circular single-stranded DNA viruses to eukaryotic genomes

17 March 2017

1 reference

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Endogenous viral elements in animal genomes

17 March 2017

1 reference

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Discovery and characterization of mammalian endogenous parvoviruses

17 March 2017

1 reference

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Genomic fossils calibrate the long-term evolution of hepadnaviruses

17 March 2017

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Unexpected inheritance: multiple integrations of ancient bornavirus and ebolavirus/marburgvirus sequences in vertebrate genomes

17 March 2017

1 reference

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Endogenous non-retroviral RNA virus elements in mammalian genomes

17 March 2017

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

17 March 2017

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

17 March 2017

1 reference

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

17 March 2017

1 reference

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Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

17 March 2017

1 reference

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Developmentally regulated piRNA clusters implicate MILI in transposon control

17 March 2017

1 reference

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CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes

17 March 2017

1 reference

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Selection of target sites for mobile DNA integration in the human genome

17 March 2017

1 reference

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Genome-wide atlas of gene expression in the adult mouse brain

17 March 2017

1 reference

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A novel class of small RNAs bind to MILI protein in mouse testes

17 March 2017

1 reference

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A germline-specific class of small RNAs binds mammalian Piwi proteins

17 March 2017

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17 March 2017

RNA silencing in plants

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Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

17 March 2017

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17 March 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Human CD34(+) stem cells express the hiwi gene, a human homologue of the Drosophila gene piwi

17 March 2017

1 reference

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Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing

17 March 2017

1 reference

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The significance of responses of the genome to challenge

17 March 2017

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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

17 March 2017

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Characterization of the piRNA Complex from Rat Testes

6 April 2017

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CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea

7 April 2017

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Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements

7 April 2017

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Small RNAs as guardians of the genome

7 April 2017

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Human LINE retrotransposons generate processed pseudogenes

7 April 2017

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Ubiquitous L1 mosaicism in hippocampal neurons

7 April 2017

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Type I interferon controls propagation of long interspersed element-1.

29 September 2017

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Integrase-mediated spacer acquisition during CRISPR-Cas adaptive immunity

29 September 2017

1 reference

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MIWI and piRNA-mediated cleavage of messenger RNAs in mouse testes

29 September 2017

1 reference

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RETRACTED: MAVS, cGAS, and endogenous retroviruses in T-independent B cell responses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

The initial uridine of primary piRNAs does not create the tenth adenine that Is the hallmark of secondary piRNAs.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

A novel class of somatic small RNAs similar to germ cell pachytene PIWI-interacting small RNAs

29 September 2017

1 reference

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Viruses and RNA interference: issues and controversies

29 September 2017

1 reference

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Inhibition of Borna disease virus replication by an endogenous bornavirus-like element in the ground squirrel genome.

29 September 2017

1 reference

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Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

29 September 2017

1 reference

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A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements

29 September 2017

1 reference

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Small RNA profiling and characterization of piRNA clusters in the adult testes of the common marmoset, a model primate.

29 September 2017

1 reference

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Characterisation of cytoplasmic DNA complementary to non-retroviral RNA viruses in human cells

29 September 2017

1 reference

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Processed pseudogenes acquired somatically during cancer development

29 September 2017

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Evolution of the retroviral restriction gene Fv1: inhibition of non-MLV retroviruses

29 September 2017

1 reference

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Distinct antiviral responses in pluripotent versus differentiated cells

29 September 2017

1 reference

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Inefficient type I interferon-mediated antiviral protection of primary mouse neurons is associated with the lack of apolipoprotein l9 expression

29 September 2017

1 reference

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The UCSC Genome Browser database: 2014 update

29 September 2017

1 reference

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Differential L1 regulation in pluripotent stem cells of humans and apes.

29 September 2017

1 reference

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Is RNA interference a physiologically relevant innate antiviral immune response in mammals?

29 September 2017

1 reference

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RNA interference functions as an antiviral immunity mechanism in mammals

29 September 2017

1 reference

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Knockdown of piRNA pathway proteins results in enhanced Semliki Forest virus production in mosquito cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

An ancient transcription factor initiates the burst of piRNA production during early meiosis in mouse testes

29 September 2017

1 reference

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RNA-mediated interference and reverse transcription control the persistence of RNA viruses in the insect model Drosophila

29 September 2017

1 reference

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The comprehensive epigenome map of piRNA clusters

29 September 2017

1 reference

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Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Targeted gene silencing in mouse germ cells by insertion of a homologous DNA into a piRNA generating locus.

29 September 2017

1 reference

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piRNA biogenesis during adult spermatogenesis in mice is independent of the ping-pong mechanism

29 September 2017

1 reference

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Paleovirology and virally derived immunity

29 September 2017

1 reference

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Bornavirus closely associates and segregates with host chromosomes to ensure persistent intranuclear infection

29 September 2017

1 reference

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A role for neuronal piRNAs in the epigenetic control of memory-related synaptic plasticity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Production of virus-derived ping-pong-dependent piRNA-like small RNAs in the mosquito soma

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Adaptation to P element transposon invasion in Drosophila melanogaster

29 September 2017

1 reference

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The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

29 September 2017

1 reference

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No evidence for natural selection on endogenous borna-like nucleoprotein elements after the divergence of Old World and New World monkeys

29 September 2017

1 reference

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Human piRNAs are under selection in Africans and repress transposable elements

29 September 2017

1 reference

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Widespread expression of piRNA-like molecules in somatic tissues

29 September 2017

1 reference

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Identification of piRNAs in the central nervous system.

29 September 2017

1 reference

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Excess type I interferon signaling in the mouse seminiferous tubules leads to germ cell loss and sterility

29 September 2017

1 reference

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Genomic RNAs of Borna disease virus are elongated on internal template motifs after realignment of the 3' termini

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes

29 September 2017

1 reference

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Cutting edge: KIR antisense transcripts are processed into a 28-base PIWI-like RNA in human NK cells

29 September 2017

1 reference

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Visualizing viral dissemination in the mouse nervous system, using a green fluorescent protein-expressing Borna disease virus vector

29 September 2017

1 reference

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Moloney leukemia virus 10 (MOV10) protein inhibits retrovirus replication

29 September 2017

1 reference

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The CRISPR system: small RNA-guided defense in bacteria and archaea

29 September 2017

1 reference

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Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

A broadly conserved pathway generates 3'UTR-directed primary piRNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

RNA silencing in germlines--exquisite collaboration of Argonaute proteins with small RNAs for germline survival

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Mouse Piwi-interacting RNAs are 2'-O-methylated at their 3' termini.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Active retrotransposition by a synthetic L1 element in mice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

RNAi is an antiviral immune response against a dsRNA virus in Drosophila melanogaster.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Late viral interference induced by transdominant Gag of an endogenous retrovirus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Selective virus resistance conferred by expression of Borna disease virus nucleocapsid components

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Molecular and cellular biology of Borna disease virus infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Flamenco, a gene controlling the gypsy retrovirus of Drosophila melanogaster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Integration of viral genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Examination of exhaustive cloning attempts reveals that C. elegans piRNAs, transposons, and repeat sequences are efficiently cloned in yeast, but not in bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Absence of a robust innate immune response in rat neurons facilitates persistent infection of Borna disease virus in neuronal tissue

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

A congenic line of the BALB/c mouse strain with the endogenous mouse mammary tumor virus proviral gene Mtv-3: tissue-specific expression and correlation with resistance to mouse mammary tumor virus infection and tumorigenesis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Vertical transmission of avian bornavirus in Psittaciformes: avian bornavirus RNA and anti-avian bornavirus antibodies in eggs, embryos, and hatchlings obtained from infected sun conures (Aratinga solstitialis).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Phylogeny, integration and expression of sigma virus-like genes in Drosophila.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Reciprocal sequence exchange between non-retro viruses and hosts leading to the appearance of new host phenotypes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Generation of biologically active retro-genes upon interaction of mouse spermatozoa with exogenous DNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Experimental vertical transmission of Borna disease virus in the mouse

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

Cellular expression of murine leukemia virus gp70-related antigen on thymocytes of uninfected mice correlates with Fv-4 gene-controlled resistance to friend leukemia virus infection

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4574747

27 November 2018

Identifiers

DOI

10.1261/RNA.052092.115

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26283688%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26283688%20AND%20SRC:MED&resulttype=core&format=json

22 February 2020

PubMed publication ID

26283688

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26283688%20AND%20SRC:MED&resulttype=core&format=json